miRNA display CGI


Results 1 - 20 of 137 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29093 5' -61.4 NC_006146.1 + 24228 0.65 0.734909
Target:  5'- gGCCgGGGCCGCccacCGCCCgggaggguuguuuuCUGAccAugGAc -3'
miRNA:   3'- -CGGaCCCGGCGc---GCGGG--------------GACU--UugCU- -5'
29093 5' -61.4 NC_006146.1 + 117794 0.66 0.728337
Target:  5'- cCCcGGGCCGgGcCGCCUCcgGAcuaGACGGa -3'
miRNA:   3'- cGGaCCCGGCgC-GCGGGGa-CU---UUGCU- -5'
29093 5' -61.4 NC_006146.1 + 24757 0.66 0.726453
Target:  5'- aGCCUccGCCGCcuGCGUCCCgcugaaaaaccaGAGACGAg -3'
miRNA:   3'- -CGGAccCGGCG--CGCGGGGa-----------CUUUGCU- -5'
29093 5' -61.4 NC_006146.1 + 128057 0.66 0.718885
Target:  5'- cGCgUGGGCCugGCG-GCCCUcGAGGCc- -3'
miRNA:   3'- -CGgACCCGG--CGCgCGGGGaCUUUGcu -5'
29093 5' -61.4 NC_006146.1 + 105881 0.66 0.718885
Target:  5'- cCCUGGGaCCGUagaagaGUGCCCauaaccaggGAAGCGGg -3'
miRNA:   3'- cGGACCC-GGCG------CGCGGGga-------CUUUGCU- -5'
29093 5' -61.4 NC_006146.1 + 92307 0.66 0.718885
Target:  5'- gGCCUGGgGCUgcugcugggggGCGgGCCcggCCUGggGCa- -3'
miRNA:   3'- -CGGACC-CGG-----------CGCgCGG---GGACuuUGcu -5'
29093 5' -61.4 NC_006146.1 + 112397 0.66 0.709366
Target:  5'- cGCCgcagGGGCUGcCGUGCCUgUGGAu--- -3'
miRNA:   3'- -CGGa---CCCGGC-GCGCGGGgACUUugcu -5'
29093 5' -61.4 NC_006146.1 + 52617 0.66 0.709366
Target:  5'- -gCUGGGCCaucuCGUGcCCCCUGAGGa-- -3'
miRNA:   3'- cgGACCCGGc---GCGC-GGGGACUUUgcu -5'
29093 5' -61.4 NC_006146.1 + 147110 0.66 0.709366
Target:  5'- aGCUgGGGCUcaGCGgGCCCCaGAcGCGc -3'
miRNA:   3'- -CGGaCCCGG--CGCgCGGGGaCUuUGCu -5'
29093 5' -61.4 NC_006146.1 + 45533 0.66 0.709366
Target:  5'- gGCCUGGGCCuccuugggcuugGC-CGCCCUggccuccGCGAg -3'
miRNA:   3'- -CGGACCCGG------------CGcGCGGGGacuu---UGCU- -5'
29093 5' -61.4 NC_006146.1 + 127557 0.66 0.699786
Target:  5'- uGCCacGGGCUGCGCcugcuGgCCCUG-GGCGGc -3'
miRNA:   3'- -CGGa-CCCGGCGCG-----CgGGGACuUUGCU- -5'
29093 5' -61.4 NC_006146.1 + 109099 0.66 0.699786
Target:  5'- uGCCgu-GCCgGCGCGCCCacuuCUGuAACGAg -3'
miRNA:   3'- -CGGaccCGG-CGCGCGGG----GACuUUGCU- -5'
29093 5' -61.4 NC_006146.1 + 72499 0.66 0.690154
Target:  5'- uGCCU-GGCUGCaGCGCCUgCggaGGAGCGGa -3'
miRNA:   3'- -CGGAcCCGGCG-CGCGGG-Ga--CUUUGCU- -5'
29093 5' -61.4 NC_006146.1 + 39783 0.66 0.690154
Target:  5'- gGCUUGGGCCcggaGCucccgGCUUCUGGGACGGc -3'
miRNA:   3'- -CGGACCCGGcg--CG-----CGGGGACUUUGCU- -5'
29093 5' -61.4 NC_006146.1 + 24070 0.66 0.690154
Target:  5'- gGCCcGGGCUcuacgcugGCGCgGCCucgCCUGGGACGc -3'
miRNA:   3'- -CGGaCCCGG--------CGCG-CGG---GGACUUUGCu -5'
29093 5' -61.4 NC_006146.1 + 21805 0.66 0.681448
Target:  5'- uGCC-GGG-CGCGCGCCCCcguUGuuauucucucguuuuAACGAg -3'
miRNA:   3'- -CGGaCCCgGCGCGCGGGG---ACu--------------UUGCU- -5'
29093 5' -61.4 NC_006146.1 + 30205 0.66 0.680479
Target:  5'- aGCCagaGGGCCGCuGCGCCCgccgggCUGGc-CGGa -3'
miRNA:   3'- -CGGa--CCCGGCG-CGCGGG------GACUuuGCU- -5'
29093 5' -61.4 NC_006146.1 + 34075 0.67 0.670767
Target:  5'- gGCacgGGGCCGgGgGUCCCggGggGCa- -3'
miRNA:   3'- -CGga-CCCGGCgCgCGGGGa-CuuUGcu -5'
29093 5' -61.4 NC_006146.1 + 3728 0.67 0.670767
Target:  5'- gGUCUcuggGGGCCGCGUGgCCCUucagcccgGGGugGGu -3'
miRNA:   3'- -CGGA----CCCGGCGCGCgGGGA--------CUUugCU- -5'
29093 5' -61.4 NC_006146.1 + 57644 0.67 0.670767
Target:  5'- ---aGGGCCacaaguuugGCGUGCCCCUGucuuAugGGu -3'
miRNA:   3'- cggaCCCGG---------CGCGCGGGGACu---UugCU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.