miRNA display CGI


Results 61 - 80 of 137 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29093 5' -61.4 NC_006146.1 + 41873 0.68 0.592645
Target:  5'- aGCUcGGGCUGCGCcguGCCCCgGAccUGAg -3'
miRNA:   3'- -CGGaCCCGGCGCG---CGGGGaCUuuGCU- -5'
29093 5' -61.4 NC_006146.1 + 105193 0.68 0.560718
Target:  5'- aCCgGGGCCGgGgaGCCgggggugcccggugCCUGAGACGAg -3'
miRNA:   3'- cGGaCCCGGCgCg-CGG--------------GGACUUUGCU- -5'
29093 5' -61.4 NC_006146.1 + 151583 0.68 0.612148
Target:  5'- gGCCUGGuuGCCGUa-GCCCaugaUGGAGCGGc -3'
miRNA:   3'- -CGGACC--CGGCGcgCGGGg---ACUUUGCU- -5'
29093 5' -61.4 NC_006146.1 + 91901 0.68 0.592645
Target:  5'- gGCCUGGGCuCGCuuuuGCGaCCCCUc---CGAu -3'
miRNA:   3'- -CGGACCCG-GCG----CGC-GGGGAcuuuGCU- -5'
29093 5' -61.4 NC_006146.1 + 104185 0.68 0.602386
Target:  5'- aGUCgcaGGGCCGUcuGCGCCCCcacGggGCc- -3'
miRNA:   3'- -CGGa--CCCGGCG--CGCGGGGa--CuuUGcu -5'
29093 5' -61.4 NC_006146.1 + 92987 0.68 0.612148
Target:  5'- aCCUGcgaGGCCGCcCGCCCCUGcgccuguuAAGCa- -3'
miRNA:   3'- cGGAC---CCGGCGcGCGGGGAC--------UUUGcu -5'
29093 5' -61.4 NC_006146.1 + 145982 0.68 0.563603
Target:  5'- gGCCUGGGCUGUGagGCCUCgaGGGcCGGg -3'
miRNA:   3'- -CGGACCCGGCGCg-CGGGGa-CUUuGCU- -5'
29093 5' -61.4 NC_006146.1 + 14386 0.69 0.506832
Target:  5'- uGUCUaGGGCCGgGagaggcaGCCCC-GAGGCGGg -3'
miRNA:   3'- -CGGA-CCCGGCgCg------CGGGGaCUUUGCU- -5'
29093 5' -61.4 NC_006146.1 + 17464 0.69 0.506832
Target:  5'- uGUCUaGGGCCGgGagaggcaGCCCC-GAGGCGGg -3'
miRNA:   3'- -CGGA-CCCGGCgCg------CGGGGaCUUUGCU- -5'
29093 5' -61.4 NC_006146.1 + 20542 0.69 0.506832
Target:  5'- uGUCUaGGGCCGgGagaggcaGCCCC-GAGGCGGg -3'
miRNA:   3'- -CGGA-CCCGGCgCg------CGGGGaCUUUGCU- -5'
29093 5' -61.4 NC_006146.1 + 45047 0.69 0.534953
Target:  5'- gGCCgGGGCCG-GCuCCCUaGggGCGGc -3'
miRNA:   3'- -CGGaCCCGGCgCGcGGGGaCuuUGCU- -5'
29093 5' -61.4 NC_006146.1 + 138874 0.69 0.534953
Target:  5'- aCCUGGGCCaGCGCcucGUCCC-GAGGCc- -3'
miRNA:   3'- cGGACCCGG-CGCG---CGGGGaCUUUGcu -5'
29093 5' -61.4 NC_006146.1 + 48233 0.69 0.516139
Target:  5'- cGCCUGGgugagcGCCGCGCggaggGCCCCcgccgccguccUGgcGCGAa -3'
miRNA:   3'- -CGGACC------CGGCGCG-----CGGGG-----------ACuuUGCU- -5'
29093 5' -61.4 NC_006146.1 + 33197 0.69 0.54445
Target:  5'- uCCUGGGCCuccGgGUGCUCCUGguGCu- -3'
miRNA:   3'- cGGACCCGG---CgCGCGGGGACuuUGcu -5'
29093 5' -61.4 NC_006146.1 + 26698 0.69 0.506832
Target:  5'- uGUCUaGGGCCGgGagaggcaGCCCC-GAGGCGGg -3'
miRNA:   3'- -CGGA-CCCGGCgCg------CGGGGaCUUUGCU- -5'
29093 5' -61.4 NC_006146.1 + 42705 0.69 0.54445
Target:  5'- gGCCcGGcGCCGCgGCGCCCCccUGGGcCGc -3'
miRNA:   3'- -CGGaCC-CGGCG-CGCGGGG--ACUUuGCu -5'
29093 5' -61.4 NC_006146.1 + 50908 0.69 0.538745
Target:  5'- gGCCUGGGCCucCGUGCCCaagaugugucuccGAGGCGu -3'
miRNA:   3'- -CGGACCCGGc-GCGCGGGga-----------CUUUGCu -5'
29093 5' -61.4 NC_006146.1 + 23620 0.69 0.506832
Target:  5'- uGUCUaGGGCCGgGagaggcaGCCCC-GAGGCGGg -3'
miRNA:   3'- -CGGA-CCCGGCgCg------CGGGGaCUUUGCU- -5'
29093 5' -61.4 NC_006146.1 + 136808 0.7 0.497597
Target:  5'- cGCgCUGGGUCGCGgcUGCCCCccGGGACc- -3'
miRNA:   3'- -CG-GACCCGGCGC--GCGGGGa-CUUUGcu -5'
29093 5' -61.4 NC_006146.1 + 112703 0.7 0.461457
Target:  5'- gGUCUGGcCCGCagcaggGCGUCCCUGAGGCc- -3'
miRNA:   3'- -CGGACCcGGCG------CGCGGGGACUUUGcu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.