miRNA display CGI


Results 1 - 20 of 137 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29093 5' -61.4 NC_006146.1 + 121155 1.1 0.000966
Target:  5'- gGCCUGGGCCGCGCGCCCCUGAAACGAg -3'
miRNA:   3'- -CGGACCCGGCGCGCGGGGACUUUGCU- -5'
29093 5' -61.4 NC_006146.1 + 99369 0.81 0.096466
Target:  5'- cGCCcGGGCCGCGCGUugaggCCCaGGAGCGAg -3'
miRNA:   3'- -CGGaCCCGGCGCGCG-----GGGaCUUUGCU- -5'
29093 5' -61.4 NC_006146.1 + 136301 0.78 0.154763
Target:  5'- gGCCggGGGCCGgGUGCCCCUGGGu--- -3'
miRNA:   3'- -CGGa-CCCGGCgCGCGGGGACUUugcu -5'
29093 5' -61.4 NC_006146.1 + 135651 0.78 0.154763
Target:  5'- gGCCggGGGCCGgGUGCCCCUGGGu--- -3'
miRNA:   3'- -CGGa-CCCGGCgCGCGGGGACUUugcu -5'
29093 5' -61.4 NC_006146.1 + 135836 0.78 0.154763
Target:  5'- gGCCggGGGCCGgGUGCCCCUGGGu--- -3'
miRNA:   3'- -CGGa-CCCGGCgCGCGGGGACUUugcu -5'
29093 5' -61.4 NC_006146.1 + 135558 0.78 0.154763
Target:  5'- gGCCggGGGCCGgGUGCCCCUGGGu--- -3'
miRNA:   3'- -CGGa-CCCGGCgCGCGGGGACUUugcu -5'
29093 5' -61.4 NC_006146.1 + 135743 0.78 0.154763
Target:  5'- gGCCggGGGCCGgGUGCCCCUGGGu--- -3'
miRNA:   3'- -CGGa-CCCGGCgCGCGGGGACUUugcu -5'
29093 5' -61.4 NC_006146.1 + 135929 0.78 0.154763
Target:  5'- gGCCggGGGCCGgGUGCCCCUGGGu--- -3'
miRNA:   3'- -CGGa-CCCGGCgCGCGGGGACUUugcu -5'
29093 5' -61.4 NC_006146.1 + 136022 0.78 0.154763
Target:  5'- gGCCggGGGCCGgGUGCCCCUGGGu--- -3'
miRNA:   3'- -CGGa-CCCGGCgCGCGGGGACUUugcu -5'
29093 5' -61.4 NC_006146.1 + 136115 0.78 0.154763
Target:  5'- gGCCggGGGCCGgGUGCCCCUGGGu--- -3'
miRNA:   3'- -CGGa-CCCGGCgCGCGGGGACUUugcu -5'
29093 5' -61.4 NC_006146.1 + 135465 0.78 0.154763
Target:  5'- gGCCggGGGCCGgGUGCCCCUGGGu--- -3'
miRNA:   3'- -CGGa-CCCGGCgCGCGGGGACUUugcu -5'
29093 5' -61.4 NC_006146.1 + 135372 0.78 0.154763
Target:  5'- gGCCggGGGCCGgGUGCCCCUGGGu--- -3'
miRNA:   3'- -CGGa-CCCGGCgCGCGGGGACUUugcu -5'
29093 5' -61.4 NC_006146.1 + 135186 0.78 0.154763
Target:  5'- gGCCggGGGCCGgGUGCCCCUGGGu--- -3'
miRNA:   3'- -CGGa-CCCGGCgCGCGGGGACUUugcu -5'
29093 5' -61.4 NC_006146.1 + 136765 0.78 0.154763
Target:  5'- gGCCggGGGCCGgGUGCCCCUGGGu--- -3'
miRNA:   3'- -CGGa-CCCGGCgCGCGGGGACUUugcu -5'
29093 5' -61.4 NC_006146.1 + 135279 0.78 0.154763
Target:  5'- gGCCggGGGCCGgGUGCCCCUGGGu--- -3'
miRNA:   3'- -CGGa-CCCGGCgCGCGGGGACUUugcu -5'
29093 5' -61.4 NC_006146.1 + 136673 0.78 0.154763
Target:  5'- gGCCggGGGCCGgGUGCCCCUGGGu--- -3'
miRNA:   3'- -CGGa-CCCGGCgCGCGGGGACUUugcu -5'
29093 5' -61.4 NC_006146.1 + 136394 0.78 0.154763
Target:  5'- gGCCggGGGCCGgGUGCCCCUGGGu--- -3'
miRNA:   3'- -CGGa-CCCGGCgCGCGGGGACUUugcu -5'
29093 5' -61.4 NC_006146.1 + 136580 0.78 0.154763
Target:  5'- gGCCggGGGCCGgGUGCCCCUGGGu--- -3'
miRNA:   3'- -CGGa-CCCGGCgCGCGGGGACUUugcu -5'
29093 5' -61.4 NC_006146.1 + 136487 0.78 0.154763
Target:  5'- gGCCggGGGCCGgGUGCCCCUGGGu--- -3'
miRNA:   3'- -CGGa-CCCGGCgCGCGGGGACUUugcu -5'
29093 5' -61.4 NC_006146.1 + 136208 0.78 0.154763
Target:  5'- gGCCggGGGCCGgGUGCCCCUGGGu--- -3'
miRNA:   3'- -CGGa-CCCGGCgCGCGGGGACUUugcu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.