miRNA display CGI


Results 21 - 40 of 137 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29093 5' -61.4 NC_006146.1 + 135186 0.78 0.154763
Target:  5'- gGCCggGGGCCGgGUGCCCCUGGGu--- -3'
miRNA:   3'- -CGGa-CCCGGCgCGCGGGGACUUugcu -5'
29093 5' -61.4 NC_006146.1 + 137509 0.78 0.154763
Target:  5'- gGCCggGGGCCGgGUGCCCCUGGGu--- -3'
miRNA:   3'- -CGGa-CCCGGCgCGCGGGGACUUugcu -5'
29093 5' -61.4 NC_006146.1 + 135279 0.78 0.154763
Target:  5'- gGCCggGGGCCGgGUGCCCCUGGGu--- -3'
miRNA:   3'- -CGGa-CCCGGCgCGCGGGGACUUugcu -5'
29093 5' -61.4 NC_006146.1 + 135372 0.78 0.154763
Target:  5'- gGCCggGGGCCGgGUGCCCCUGGGu--- -3'
miRNA:   3'- -CGGa-CCCGGCgCGCGGGGACUUugcu -5'
29093 5' -61.4 NC_006146.1 + 135558 0.78 0.154763
Target:  5'- gGCCggGGGCCGgGUGCCCCUGGGu--- -3'
miRNA:   3'- -CGGa-CCCGGCgCGCGGGGACUUugcu -5'
29093 5' -61.4 NC_006146.1 + 135651 0.78 0.154763
Target:  5'- gGCCggGGGCCGgGUGCCCCUGGGu--- -3'
miRNA:   3'- -CGGa-CCCGGCgCGCGGGGACUUugcu -5'
29093 5' -61.4 NC_006146.1 + 135465 0.78 0.154763
Target:  5'- gGCCggGGGCCGgGUGCCCCUGGGu--- -3'
miRNA:   3'- -CGGa-CCCGGCgCGCGGGGACUUugcu -5'
29093 5' -61.4 NC_006146.1 + 135743 0.78 0.154763
Target:  5'- gGCCggGGGCCGgGUGCCCCUGGGu--- -3'
miRNA:   3'- -CGGa-CCCGGCgCGCGGGGACUUugcu -5'
29093 5' -61.4 NC_006146.1 + 135836 0.78 0.154763
Target:  5'- gGCCggGGGCCGgGUGCCCCUGGGu--- -3'
miRNA:   3'- -CGGa-CCCGGCgCGCGGGGACUUugcu -5'
29093 5' -61.4 NC_006146.1 + 101176 0.77 0.19697
Target:  5'- aCCUGGGCUGCcugGCCCUUGAAACGc -3'
miRNA:   3'- cGGACCCGGCGcg-CGGGGACUUUGCu -5'
29093 5' -61.4 NC_006146.1 + 93588 0.76 0.226875
Target:  5'- aGCCUGGGCaUGCGCgacccgccggGCUCCUGggGCu- -3'
miRNA:   3'- -CGGACCCG-GCGCG----------CGGGGACuuUGcu -5'
29093 5' -61.4 NC_006146.1 + 125955 0.74 0.266528
Target:  5'- cCCgGGGCCucccCGCGCCCCUGGccACGAg -3'
miRNA:   3'- cGGaCCCGGc---GCGCGGGGACUu-UGCU- -5'
29093 5' -61.4 NC_006146.1 + 33414 0.73 0.332624
Target:  5'- cGCCUGGGCacCGCuGCGCCgccgcucgguCCUGggGCu- -3'
miRNA:   3'- -CGGACCCG--GCG-CGCGG----------GGACuuUGcu -5'
29093 5' -61.4 NC_006146.1 + 25857 0.73 0.332624
Target:  5'- cGCCaGGGCUGCGCGCucacgcugCCCgGGAACa- -3'
miRNA:   3'- -CGGaCCCGGCGCGCG--------GGGaCUUUGcu -5'
29093 5' -61.4 NC_006146.1 + 150021 0.73 0.339858
Target:  5'- gGCCUuGGCCcgcuccagcaucGUGCGCCCCUGcAGCGu -3'
miRNA:   3'- -CGGAcCCGG------------CGCGCGGGGACuUUGCu -5'
29093 5' -61.4 NC_006146.1 + 32977 0.72 0.347206
Target:  5'- cGCgCUGGGUCGCGgcUGCCCCcGGAACc- -3'
miRNA:   3'- -CG-GACCCGGCGC--GCGGGGaCUUUGcu -5'
29093 5' -61.4 NC_006146.1 + 146853 0.72 0.36224
Target:  5'- gGCCUggcucgGGGCCGCGUcaCCCCgccaggGGGACGAc -3'
miRNA:   3'- -CGGA------CCCGGCGCGc-GGGGa-----CUUUGCU- -5'
29093 5' -61.4 NC_006146.1 + 39854 0.72 0.369924
Target:  5'- gGCCggcggGGGCUGUGUGCCCggGGGAgGAg -3'
miRNA:   3'- -CGGa----CCCGGCGCGCGGGgaCUUUgCU- -5'
29093 5' -61.4 NC_006146.1 + 167525 0.72 0.376935
Target:  5'- cGCC-GGGCCGCGCccccgGCCCCUcuccuggGAGGCc- -3'
miRNA:   3'- -CGGaCCCGGCGCG-----CGGGGA-------CUUUGcu -5'
29093 5' -61.4 NC_006146.1 + 168457 0.72 0.376935
Target:  5'- cGCC-GGGCCGCGCccccgGCCCCUcuccuggGAGGCc- -3'
miRNA:   3'- -CGGaCCCGGCGCG-----CGGGGA-------CUUUGcu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.