miRNA display CGI


Results 41 - 60 of 137 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29093 5' -61.4 NC_006146.1 + 169389 0.72 0.376935
Target:  5'- cGCC-GGGCCGCGCccccgGCCCCUcuccuggGAGGCc- -3'
miRNA:   3'- -CGGaCCCGGCGCG-----CGGGGA-------CUUUGcu -5'
29093 5' -61.4 NC_006146.1 + 170320 0.72 0.376935
Target:  5'- cGCC-GGGCCGCGCccccgGCCCCUcuccuggGAGGCc- -3'
miRNA:   3'- -CGGaCCCGGCGCG-----CGGGGA-------CUUUGcu -5'
29093 5' -61.4 NC_006146.1 + 39690 0.71 0.418316
Target:  5'- uCCUGGGCCugcaGCGcCGCUCCgGAGGCa- -3'
miRNA:   3'- cGGACCCGG----CGC-GCGGGGaCUUUGcu -5'
29093 5' -61.4 NC_006146.1 + 123158 0.71 0.418316
Target:  5'- cGCCaGGGCgCGCGaggagGCCCCgGAcGACGAg -3'
miRNA:   3'- -CGGaCCCG-GCGCg----CGGGGaCU-UUGCU- -5'
29093 5' -61.4 NC_006146.1 + 103582 0.71 0.424209
Target:  5'- gGCCUGGGCCGgGCucagcgcggacgugGCCCggGAGcugGCGGa -3'
miRNA:   3'- -CGGACCCGGCgCG--------------CGGGgaCUU---UGCU- -5'
29093 5' -61.4 NC_006146.1 + 129680 0.71 0.425055
Target:  5'- cGCCUGGccaCGCGCGCCCagugcccgcggaUGggGCGc -3'
miRNA:   3'- -CGGACCcg-GCGCGCGGGg-----------ACuuUGCu -5'
29093 5' -61.4 NC_006146.1 + 130471 0.7 0.452638
Target:  5'- cGCCUacgGGGCCGCuGcCGCCCC-GGGugGc -3'
miRNA:   3'- -CGGA---CCCGGCG-C-GCGGGGaCUUugCu -5'
29093 5' -61.4 NC_006146.1 + 111748 0.7 0.452638
Target:  5'- -aCUGGG-UG-GCGUCCCUGAGGCGGg -3'
miRNA:   3'- cgGACCCgGCgCGCGGGGACUUUGCU- -5'
29093 5' -61.4 NC_006146.1 + 112703 0.7 0.461457
Target:  5'- gGUCUGGcCCGCagcaggGCGUCCCUGAGGCc- -3'
miRNA:   3'- -CGGACCcGGCG------CGCGGGGACUUUGcu -5'
29093 5' -61.4 NC_006146.1 + 33377 0.7 0.461457
Target:  5'- cGCC-GGGCCGC-UGCCCCgcuccGGGugGGg -3'
miRNA:   3'- -CGGaCCCGGCGcGCGGGGa----CUUugCU- -5'
29093 5' -61.4 NC_006146.1 + 33255 0.7 0.461457
Target:  5'- cGCC-GGGCCGC-UGCCCCgcuccGGGugGGg -3'
miRNA:   3'- -CGGaCCCGGCGcGCGGGGa----CUUugCU- -5'
29093 5' -61.4 NC_006146.1 + 33131 0.7 0.461457
Target:  5'- cGCC-GGGCCGC-UGCCCCgcuccGGGugGGg -3'
miRNA:   3'- -CGGaCCCGGCGcGCGGGGa----CUUugCU- -5'
29093 5' -61.4 NC_006146.1 + 47878 0.7 0.467683
Target:  5'- aCCUGGGCCGCcucggccucggucaGCGCUCC-GAGAaGAa -3'
miRNA:   3'- cGGACCCGGCG--------------CGCGGGGaCUUUgCU- -5'
29093 5' -61.4 NC_006146.1 + 13770 0.7 0.470365
Target:  5'- cGCCaUGGGCgaggCGUGCGCCUcgCUGAcucugGACGAc -3'
miRNA:   3'- -CGG-ACCCG----GCGCGCGGG--GACU-----UUGCU- -5'
29093 5' -61.4 NC_006146.1 + 167656 0.7 0.470365
Target:  5'- uGCCggGGGCCcggggGCGUGUCCCgcgacccgaGggGCGAg -3'
miRNA:   3'- -CGGa-CCCGG-----CGCGCGGGGa--------CuuUGCU- -5'
29093 5' -61.4 NC_006146.1 + 38250 0.7 0.470365
Target:  5'- cGUCUcGGcGCCGUGUGUgCCUGGAACa- -3'
miRNA:   3'- -CGGA-CC-CGGCGCGCGgGGACUUUGcu -5'
29093 5' -61.4 NC_006146.1 + 123254 0.7 0.47936
Target:  5'- cGCgCUGGGCCGggcCGCGgCCa-GAGACGGc -3'
miRNA:   3'- -CG-GACCCGGC---GCGCgGGgaCUUUGCU- -5'
29093 5' -61.4 NC_006146.1 + 72567 0.7 0.47936
Target:  5'- aCCgggacGGGCCGCGCccgGCCCCgUGccAGACGGc -3'
miRNA:   3'- cGGa----CCCGGCGCG---CGGGG-AC--UUUGCU- -5'
29093 5' -61.4 NC_006146.1 + 136808 0.7 0.497597
Target:  5'- cGCgCUGGGUCGCGgcUGCCCCccGGGACc- -3'
miRNA:   3'- -CG-GACCCGGCGC--GCGGGGa-CUUUGcu -5'
29093 5' -61.4 NC_006146.1 + 14386 0.69 0.506832
Target:  5'- uGUCUaGGGCCGgGagaggcaGCCCC-GAGGCGGg -3'
miRNA:   3'- -CGGA-CCCGGCgCg------CGGGGaCUUUGCU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.