miRNA display CGI


Results 61 - 80 of 137 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29093 5' -61.4 NC_006146.1 + 23620 0.69 0.506832
Target:  5'- uGUCUaGGGCCGgGagaggcaGCCCC-GAGGCGGg -3'
miRNA:   3'- -CGGA-CCCGGCgCg------CGGGGaCUUUGCU- -5'
29093 5' -61.4 NC_006146.1 + 14386 0.69 0.506832
Target:  5'- uGUCUaGGGCCGgGagaggcaGCCCC-GAGGCGGg -3'
miRNA:   3'- -CGGA-CCCGGCgCg------CGGGGaCUUUGCU- -5'
29093 5' -61.4 NC_006146.1 + 20542 0.69 0.506832
Target:  5'- uGUCUaGGGCCGgGagaggcaGCCCC-GAGGCGGg -3'
miRNA:   3'- -CGGA-CCCGGCgCg------CGGGGaCUUUGCU- -5'
29093 5' -61.4 NC_006146.1 + 17464 0.69 0.506832
Target:  5'- uGUCUaGGGCCGgGagaggcaGCCCC-GAGGCGGg -3'
miRNA:   3'- -CGGA-CCCGGCgCg------CGGGGaCUUUGCU- -5'
29093 5' -61.4 NC_006146.1 + 48233 0.69 0.516139
Target:  5'- cGCCUGGgugagcGCCGCGCggaggGCCCCcgccgccguccUGgcGCGAa -3'
miRNA:   3'- -CGGACC------CGGCGCG-----CGGGG-----------ACuuUGCU- -5'
29093 5' -61.4 NC_006146.1 + 45047 0.69 0.534953
Target:  5'- gGCCgGGGCCG-GCuCCCUaGggGCGGc -3'
miRNA:   3'- -CGGaCCCGGCgCGcGGGGaCuuUGCU- -5'
29093 5' -61.4 NC_006146.1 + 138874 0.69 0.534953
Target:  5'- aCCUGGGCCaGCGCcucGUCCC-GAGGCc- -3'
miRNA:   3'- cGGACCCGG-CGCG---CGGGGaCUUUGcu -5'
29093 5' -61.4 NC_006146.1 + 50908 0.69 0.538745
Target:  5'- gGCCUGGGCCucCGUGCCCaagaugugucuccGAGGCGu -3'
miRNA:   3'- -CGGACCCGGc-GCGCGGGga-----------CUUUGCu -5'
29093 5' -61.4 NC_006146.1 + 33197 0.69 0.54445
Target:  5'- uCCUGGGCCuccGgGUGCUCCUGguGCu- -3'
miRNA:   3'- cGGACCCGG---CgCGCGGGGACuuUGcu -5'
29093 5' -61.4 NC_006146.1 + 42705 0.69 0.54445
Target:  5'- gGCCcGGcGCCGCgGCGCCCCccUGGGcCGc -3'
miRNA:   3'- -CGGaCC-CGGCG-CGCGGGG--ACUUuGCu -5'
29093 5' -61.4 NC_006146.1 + 105193 0.68 0.560718
Target:  5'- aCCgGGGCCGgGgaGCCgggggugcccggugCCUGAGACGAg -3'
miRNA:   3'- cGGaCCCGGCgCg-CGG--------------GGACUUUGCU- -5'
29093 5' -61.4 NC_006146.1 + 142904 0.68 0.563603
Target:  5'- gGCCUGGGCUGUGagGCCUCgaGGGcCGGg -3'
miRNA:   3'- -CGGACCCGGCGCg-CGGGGa-CUUuGCU- -5'
29093 5' -61.4 NC_006146.1 + 149060 0.68 0.563603
Target:  5'- gGCCUGGGCUGUGagGCCUCgaGGGcCGGg -3'
miRNA:   3'- -CGGACCCGGCGCg-CGGGGa-CUUuGCU- -5'
29093 5' -61.4 NC_006146.1 + 152138 0.68 0.563603
Target:  5'- gGCCUGGGCUGUGagGCCUCgaGGGcCGGg -3'
miRNA:   3'- -CGGACCCGGCGCg-CGGGGa-CUUuGCU- -5'
29093 5' -61.4 NC_006146.1 + 155216 0.68 0.563603
Target:  5'- gGCCUGGGCUGUGagGCCUCgaGGGcCGGg -3'
miRNA:   3'- -CGGACCCGGCGCg-CGGGGa-CUUuGCU- -5'
29093 5' -61.4 NC_006146.1 + 158295 0.68 0.563603
Target:  5'- gGCCUGGGCUGUGagGCCUCgaGGGcCGGg -3'
miRNA:   3'- -CGGACCCGGCGCg-CGGGGa-CUUuGCU- -5'
29093 5' -61.4 NC_006146.1 + 145982 0.68 0.563603
Target:  5'- gGCCUGGGCUGUGagGCCUCgaGGGcCGGg -3'
miRNA:   3'- -CGGACCCGGCGCg-CGGGGa-CUUuGCU- -5'
29093 5' -61.4 NC_006146.1 + 47743 0.68 0.563603
Target:  5'- uCCgGGGCCuccucGCGCGCCCU---GGCGAg -3'
miRNA:   3'- cGGaCCCGG-----CGCGCGGGGacuUUGCU- -5'
29093 5' -61.4 NC_006146.1 + 31858 0.68 0.573247
Target:  5'- cUCUGGGUccaCGCuucCGCCCCUGGGAUGc -3'
miRNA:   3'- cGGACCCG---GCGc--GCGGGGACUUUGCu -5'
29093 5' -61.4 NC_006146.1 + 167843 0.68 0.573247
Target:  5'- aGCCUGGGCCaaCGCGCUCUcggcguaGggGCa- -3'
miRNA:   3'- -CGGACCCGGc-GCGCGGGGa------CuuUGcu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.