miRNA display CGI


Results 81 - 100 of 137 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29093 5' -61.4 NC_006146.1 + 71694 0.68 0.573247
Target:  5'- cGCC-GaGGCCGCG-GCCUCccugGAGGCGGa -3'
miRNA:   3'- -CGGaC-CCGGCGCgCGGGGa---CUUUGCU- -5'
29093 5' -61.4 NC_006146.1 + 31858 0.68 0.573247
Target:  5'- cUCUGGGUccaCGCuucCGCCCCUGGGAUGc -3'
miRNA:   3'- cGGACCCG---GCGc--GCGGGGACUUUGCu -5'
29093 5' -61.4 NC_006146.1 + 167843 0.68 0.573247
Target:  5'- aGCCUGGGCCaaCGCGCUCUcggcguaGggGCa- -3'
miRNA:   3'- -CGGACCCGGc-GCGCGGGGa------CuuUGcu -5'
29093 5' -61.4 NC_006146.1 + 162343 0.68 0.573247
Target:  5'- aGCCcGGGCUGCagcuaugaGCGCCUUgGAGAUGGa -3'
miRNA:   3'- -CGGaCCCGGCG--------CGCGGGGaCUUUGCU- -5'
29093 5' -61.4 NC_006146.1 + 169276 0.68 0.573247
Target:  5'- gGCCUggcggGGGCCaGCGCgggGUCCC-GggGCGGg -3'
miRNA:   3'- -CGGA-----CCCGG-CGCG---CGGGGaCuuUGCU- -5'
29093 5' -61.4 NC_006146.1 + 167412 0.68 0.573247
Target:  5'- gGCCUggcggGGGCCaGCGCgggGUCCC-GggGCGGg -3'
miRNA:   3'- -CGGA-----CCCGG-CGCG---CGGGGaCuuUGCU- -5'
29093 5' -61.4 NC_006146.1 + 168344 0.68 0.573247
Target:  5'- gGCCUggcggGGGCCaGCGCgggGUCCC-GggGCGGg -3'
miRNA:   3'- -CGGA-----CCCGG-CGCG---CGGGGaCuuUGCU- -5'
29093 5' -61.4 NC_006146.1 + 170207 0.68 0.573247
Target:  5'- gGCCUggcggGGGCCaGCGCgggGUCCC-GggGCGGg -3'
miRNA:   3'- -CGGA-----CCCGG-CGCG---CGGGGaCuuUGCU- -5'
29093 5' -61.4 NC_006146.1 + 157637 0.68 0.58293
Target:  5'- cGCCUGGGUCuuGgGCaccaGCCCCUGGAcCa- -3'
miRNA:   3'- -CGGACCCGG--CgCG----CGGGGACUUuGcu -5'
29093 5' -61.4 NC_006146.1 + 160998 0.68 0.588756
Target:  5'- gGCCUGaccucagccccauGCCGUGUGCaugcguaCCUGAAGCGGg -3'
miRNA:   3'- -CGGACc------------CGGCGCGCGg------GGACUUUGCU- -5'
29093 5' -61.4 NC_006146.1 + 91901 0.68 0.592645
Target:  5'- gGCCUGGGCuCGCuuuuGCGaCCCCUc---CGAu -3'
miRNA:   3'- -CGGACCCG-GCG----CGC-GGGGAcuuuGCU- -5'
29093 5' -61.4 NC_006146.1 + 41873 0.68 0.592645
Target:  5'- aGCUcGGGCUGCGCcguGCCCCgGAccUGAg -3'
miRNA:   3'- -CGGaCCCGGCGCG---CGGGGaCUuuGCU- -5'
29093 5' -61.4 NC_006146.1 + 56122 0.68 0.602386
Target:  5'- gGCgaagGuGGCCGCGgGCCCC-GAGAcCGAg -3'
miRNA:   3'- -CGga--C-CCGGCGCgCGGGGaCUUU-GCU- -5'
29093 5' -61.4 NC_006146.1 + 104185 0.68 0.602386
Target:  5'- aGUCgcaGGGCCGUcuGCGCCCCcacGggGCc- -3'
miRNA:   3'- -CGGa--CCCGGCG--CGCGGGGa--CuuUGcu -5'
29093 5' -61.4 NC_006146.1 + 92987 0.68 0.612148
Target:  5'- aCCUGcgaGGCCGCcCGCCCCUGcgccuguuAAGCa- -3'
miRNA:   3'- cGGAC---CCGGCGcGCGGGGAC--------UUUGcu -5'
29093 5' -61.4 NC_006146.1 + 40980 0.68 0.612148
Target:  5'- cGCCgUGGuGCCGCGCcggcGCCCCagGgcGCa- -3'
miRNA:   3'- -CGG-ACC-CGGCGCG----CGGGGa-CuuUGcu -5'
29093 5' -61.4 NC_006146.1 + 151583 0.68 0.612148
Target:  5'- gGCCUGGuuGCCGUa-GCCCaugaUGGAGCGGc -3'
miRNA:   3'- -CGGACC--CGGCGcgCGGGg---ACUUUGCU- -5'
29093 5' -61.4 NC_006146.1 + 147729 0.67 0.621923
Target:  5'- gGCCUGGGUaauaGCGgGCCgC--GAGCGAc -3'
miRNA:   3'- -CGGACCCGg---CGCgCGGgGacUUUGCU- -5'
29093 5' -61.4 NC_006146.1 + 167270 0.67 0.621923
Target:  5'- gGCCcgGGGCCGCGCGUg---GGGAUGGc -3'
miRNA:   3'- -CGGa-CCCGGCGCGCGgggaCUUUGCU- -5'
29093 5' -61.4 NC_006146.1 + 168202 0.67 0.621923
Target:  5'- gGCCcgGGGCCGCGCGUg---GGGAUGGc -3'
miRNA:   3'- -CGGa-CCCGGCGCGCGgggaCUUUGCU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.