miRNA display CGI


Results 21 - 40 of 137 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29093 5' -61.4 NC_006146.1 + 48039 0.67 0.661026
Target:  5'- gGCCggcucGGGUCGUccaGCGCCCCgGGcAGCGu -3'
miRNA:   3'- -CGGa----CCCGGCG---CGCGGGGaCU-UUGCu -5'
29093 5' -61.4 NC_006146.1 + 70696 0.67 0.661026
Target:  5'- gGCCacGGGCCGCcugGUGUCUCUG--GCGAu -3'
miRNA:   3'- -CGGa-CCCGGCG---CGCGGGGACuuUGCU- -5'
29093 5' -61.4 NC_006146.1 + 102901 0.67 0.661026
Target:  5'- cGCCagGGGCCGUguggcguggcuGCGCCCCaaGAucGugGGc -3'
miRNA:   3'- -CGGa-CCCGGCG-----------CGCGGGGa-CU--UugCU- -5'
29093 5' -61.4 NC_006146.1 + 14681 0.67 0.661026
Target:  5'- gGCCgaggGGGCC-CGCGUCuCCUGcAACc- -3'
miRNA:   3'- -CGGa---CCCGGcGCGCGG-GGACuUUGcu -5'
29093 5' -61.4 NC_006146.1 + 41528 0.67 0.651264
Target:  5'- cGCCcGGGauCCGCGgGCUccuCCUGAGGCu- -3'
miRNA:   3'- -CGGaCCC--GGCGCgCGG---GGACUUUGcu -5'
29093 5' -61.4 NC_006146.1 + 56671 0.67 0.651264
Target:  5'- cCCUgaGGuGCCGgGC-CCCCUGggGCu- -3'
miRNA:   3'- cGGA--CC-CGGCgCGcGGGGACuuUGcu -5'
29093 5' -61.4 NC_006146.1 + 77312 0.67 0.651264
Target:  5'- aGCCcggcGGGUCGCGCauGCCCaggCUGAuggugaagGACGAg -3'
miRNA:   3'- -CGGa---CCCGGCGCG--CGGG---GACU--------UUGCU- -5'
29093 5' -61.4 NC_006146.1 + 97859 0.67 0.651264
Target:  5'- ---gGGGCCGC-CGaCCCCgggccgUGGAACGAg -3'
miRNA:   3'- cggaCCCGGCGcGC-GGGG------ACUUUGCU- -5'
29093 5' -61.4 NC_006146.1 + 103118 0.67 0.641488
Target:  5'- aGCCUGGccGCCGUcaCGUCCCUGGc-CGAg -3'
miRNA:   3'- -CGGACC--CGGCGc-GCGGGGACUuuGCU- -5'
29093 5' -61.4 NC_006146.1 + 115656 0.67 0.641488
Target:  5'- cGCCcGGGCCGCccggGCGacguaCCUGAgGGCGGa -3'
miRNA:   3'- -CGGaCCCGGCG----CGCgg---GGACU-UUGCU- -5'
29093 5' -61.4 NC_006146.1 + 128544 0.67 0.641488
Target:  5'- cCCUGGcGgCGCGgGagaUCCUGGAGCGGc -3'
miRNA:   3'- cGGACC-CgGCGCgCg--GGGACUUUGCU- -5'
29093 5' -61.4 NC_006146.1 + 47242 0.67 0.64051
Target:  5'- aGCUggcgcGGGUCGaCGUgGCCCCUGGcccggguGACGAg -3'
miRNA:   3'- -CGGa----CCCGGC-GCG-CGGGGACU-------UUGCU- -5'
29093 5' -61.4 NC_006146.1 + 71531 0.67 0.631706
Target:  5'- uCCUGGGCCucaacGCGCGgCCCgGGcgccGACGc -3'
miRNA:   3'- cGGACCCGG-----CGCGCgGGGaCU----UUGCu -5'
29093 5' -61.4 NC_006146.1 + 15312 0.67 0.630727
Target:  5'- gGCCgGaGGCCagccccgGUGUGCCCCUGGcgGGCGc -3'
miRNA:   3'- -CGGaC-CCGG-------CGCGCGGGGACU--UUGCu -5'
29093 5' -61.4 NC_006146.1 + 139141 0.67 0.62877
Target:  5'- gGCCgaacggGGGCUcccgucccccggggGgGCGCCUgUGAGGCGGc -3'
miRNA:   3'- -CGGa-----CCCGG--------------CgCGCGGGgACUUUGCU- -5'
29093 5' -61.4 NC_006146.1 + 168202 0.67 0.621923
Target:  5'- gGCCcgGGGCCGCGCGUg---GGGAUGGc -3'
miRNA:   3'- -CGGa-CCCGGCGCGCGgggaCUUUGCU- -5'
29093 5' -61.4 NC_006146.1 + 147729 0.67 0.621923
Target:  5'- gGCCUGGGUaauaGCGgGCCgC--GAGCGAc -3'
miRNA:   3'- -CGGACCCGg---CGCgCGGgGacUUUGCU- -5'
29093 5' -61.4 NC_006146.1 + 169134 0.67 0.621923
Target:  5'- gGCCcgGGGCCGCGCGUg---GGGAUGGc -3'
miRNA:   3'- -CGGa-CCCGGCGCGCGgggaCUUUGCU- -5'
29093 5' -61.4 NC_006146.1 + 170066 0.67 0.621923
Target:  5'- gGCCcgGGGCCGCGCGUg---GGGAUGGc -3'
miRNA:   3'- -CGGa-CCCGGCGCGCGgggaCUUUGCU- -5'
29093 5' -61.4 NC_006146.1 + 167270 0.67 0.621923
Target:  5'- gGCCcgGGGCCGCGCGUg---GGGAUGGc -3'
miRNA:   3'- -CGGa-CCCGGCGCGCGgggaCUUUGCU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.