miRNA display CGI


Results 1 - 20 of 137 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29093 5' -61.4 NC_006146.1 + 3728 0.67 0.670767
Target:  5'- gGUCUcuggGGGCCGCGUGgCCCUucagcccgGGGugGGu -3'
miRNA:   3'- -CGGA----CCCGGCGCGCgGGGA--------CUUugCU- -5'
29093 5' -61.4 NC_006146.1 + 13770 0.7 0.470365
Target:  5'- cGCCaUGGGCgaggCGUGCGCCUcgCUGAcucugGACGAc -3'
miRNA:   3'- -CGG-ACCCG----GCGCGCGGG--GACU-----UUGCU- -5'
29093 5' -61.4 NC_006146.1 + 14386 0.69 0.506832
Target:  5'- uGUCUaGGGCCGgGagaggcaGCCCC-GAGGCGGg -3'
miRNA:   3'- -CGGA-CCCGGCgCg------CGGGGaCUUUGCU- -5'
29093 5' -61.4 NC_006146.1 + 14681 0.67 0.661026
Target:  5'- gGCCgaggGGGCC-CGCGUCuCCUGcAACc- -3'
miRNA:   3'- -CGGa---CCCGGcGCGCGG-GGACuUUGcu -5'
29093 5' -61.4 NC_006146.1 + 15312 0.67 0.630727
Target:  5'- gGCCgGaGGCCagccccgGUGUGCCCCUGGcgGGCGc -3'
miRNA:   3'- -CGGaC-CCGG-------CGCGCGGGGACU--UUGCu -5'
29093 5' -61.4 NC_006146.1 + 17464 0.69 0.506832
Target:  5'- uGUCUaGGGCCGgGagaggcaGCCCC-GAGGCGGg -3'
miRNA:   3'- -CGGA-CCCGGCgCg------CGGGGaCUUUGCU- -5'
29093 5' -61.4 NC_006146.1 + 20542 0.69 0.506832
Target:  5'- uGUCUaGGGCCGgGagaggcaGCCCC-GAGGCGGg -3'
miRNA:   3'- -CGGA-CCCGGCgCg------CGGGGaCUUUGCU- -5'
29093 5' -61.4 NC_006146.1 + 21805 0.66 0.681448
Target:  5'- uGCC-GGG-CGCGCGCCCCcguUGuuauucucucguuuuAACGAg -3'
miRNA:   3'- -CGGaCCCgGCGCGCGGGG---ACu--------------UUGCU- -5'
29093 5' -61.4 NC_006146.1 + 23620 0.69 0.506832
Target:  5'- uGUCUaGGGCCGgGagaggcaGCCCC-GAGGCGGg -3'
miRNA:   3'- -CGGA-CCCGGCgCg------CGGGGaCUUUGCU- -5'
29093 5' -61.4 NC_006146.1 + 24070 0.66 0.690154
Target:  5'- gGCCcGGGCUcuacgcugGCGCgGCCucgCCUGGGACGc -3'
miRNA:   3'- -CGGaCCCGG--------CGCG-CGG---GGACUUUGCu -5'
29093 5' -61.4 NC_006146.1 + 24228 0.65 0.734909
Target:  5'- gGCCgGGGCCGCccacCGCCCgggaggguuguuuuCUGAccAugGAc -3'
miRNA:   3'- -CGGaCCCGGCGc---GCGGG--------------GACU--UugCU- -5'
29093 5' -61.4 NC_006146.1 + 24757 0.66 0.726453
Target:  5'- aGCCUccGCCGCcuGCGUCCCgcugaaaaaccaGAGACGAg -3'
miRNA:   3'- -CGGAccCGGCG--CGCGGGGa-----------CUUUGCU- -5'
29093 5' -61.4 NC_006146.1 + 25857 0.73 0.332624
Target:  5'- cGCCaGGGCUGCGCGCucacgcugCCCgGGAACa- -3'
miRNA:   3'- -CGGaCCCGGCGCGCG--------GGGaCUUUGcu -5'
29093 5' -61.4 NC_006146.1 + 26698 0.69 0.506832
Target:  5'- uGUCUaGGGCCGgGagaggcaGCCCC-GAGGCGGg -3'
miRNA:   3'- -CGGA-CCCGGCgCg------CGGGGaCUUUGCU- -5'
29093 5' -61.4 NC_006146.1 + 30205 0.66 0.680479
Target:  5'- aGCCagaGGGCCGCuGCGCCCgccgggCUGGc-CGGa -3'
miRNA:   3'- -CGGa--CCCGGCG-CGCGGG------GACUuuGCU- -5'
29093 5' -61.4 NC_006146.1 + 31858 0.68 0.573247
Target:  5'- cUCUGGGUccaCGCuucCGCCCCUGGGAUGc -3'
miRNA:   3'- cGGACCCG---GCGc--GCGGGGACUUUGCu -5'
29093 5' -61.4 NC_006146.1 + 32977 0.72 0.347206
Target:  5'- cGCgCUGGGUCGCGgcUGCCCCcGGAACc- -3'
miRNA:   3'- -CG-GACCCGGCGC--GCGGGGaCUUUGcu -5'
29093 5' -61.4 NC_006146.1 + 33131 0.7 0.461457
Target:  5'- cGCC-GGGCCGC-UGCCCCgcuccGGGugGGg -3'
miRNA:   3'- -CGGaCCCGGCGcGCGGGGa----CUUugCU- -5'
29093 5' -61.4 NC_006146.1 + 33197 0.69 0.54445
Target:  5'- uCCUGGGCCuccGgGUGCUCCUGguGCu- -3'
miRNA:   3'- cGGACCCGG---CgCGCGGGGACuuUGcu -5'
29093 5' -61.4 NC_006146.1 + 33255 0.7 0.461457
Target:  5'- cGCC-GGGCCGC-UGCCCCgcuccGGGugGGg -3'
miRNA:   3'- -CGGaCCCGGCGcGCGGGGa----CUUugCU- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.