miRNA display CGI


Results 41 - 60 of 137 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29093 5' -61.4 NC_006146.1 + 52617 0.66 0.709366
Target:  5'- -gCUGGGCCaucuCGUGcCCCCUGAGGa-- -3'
miRNA:   3'- cgGACCCGGc---GCGC-GGGGACUUUgcu -5'
29093 5' -61.4 NC_006146.1 + 56122 0.68 0.602386
Target:  5'- gGCgaagGuGGCCGCGgGCCCC-GAGAcCGAg -3'
miRNA:   3'- -CGga--C-CCGGCGCgCGGGGaCUUU-GCU- -5'
29093 5' -61.4 NC_006146.1 + 56671 0.67 0.651264
Target:  5'- cCCUgaGGuGCCGgGC-CCCCUGggGCu- -3'
miRNA:   3'- cGGA--CC-CGGCgCGcGGGGACuuUGcu -5'
29093 5' -61.4 NC_006146.1 + 57644 0.67 0.670767
Target:  5'- ---aGGGCCacaaguuugGCGUGCCCCUGucuuAugGGu -3'
miRNA:   3'- cggaCCCGG---------CGCGCGGGGACu---UugCU- -5'
29093 5' -61.4 NC_006146.1 + 70696 0.67 0.661026
Target:  5'- gGCCacGGGCCGCcugGUGUCUCUG--GCGAu -3'
miRNA:   3'- -CGGa-CCCGGCG---CGCGGGGACuuUGCU- -5'
29093 5' -61.4 NC_006146.1 + 71531 0.67 0.631706
Target:  5'- uCCUGGGCCucaacGCGCGgCCCgGGcgccGACGc -3'
miRNA:   3'- cGGACCCGG-----CGCGCgGGGaCU----UUGCu -5'
29093 5' -61.4 NC_006146.1 + 71694 0.68 0.573247
Target:  5'- cGCC-GaGGCCGCG-GCCUCccugGAGGCGGa -3'
miRNA:   3'- -CGGaC-CCGGCGCgCGGGGa---CUUUGCU- -5'
29093 5' -61.4 NC_006146.1 + 72499 0.66 0.690154
Target:  5'- uGCCU-GGCUGCaGCGCCUgCggaGGAGCGGa -3'
miRNA:   3'- -CGGAcCCGGCG-CGCGGG-Ga--CUUUGCU- -5'
29093 5' -61.4 NC_006146.1 + 72567 0.7 0.47936
Target:  5'- aCCgggacGGGCCGCGCccgGCCCCgUGccAGACGGc -3'
miRNA:   3'- cGGa----CCCGGCGCG---CGGGG-AC--UUUGCU- -5'
29093 5' -61.4 NC_006146.1 + 77312 0.67 0.651264
Target:  5'- aGCCcggcGGGUCGCGCauGCCCaggCUGAuggugaagGACGAg -3'
miRNA:   3'- -CGGa---CCCGGCGCG--CGGG---GACU--------UUGCU- -5'
29093 5' -61.4 NC_006146.1 + 91901 0.68 0.592645
Target:  5'- gGCCUGGGCuCGCuuuuGCGaCCCCUc---CGAu -3'
miRNA:   3'- -CGGACCCG-GCG----CGC-GGGGAcuuuGCU- -5'
29093 5' -61.4 NC_006146.1 + 92307 0.66 0.718885
Target:  5'- gGCCUGGgGCUgcugcugggggGCGgGCCcggCCUGggGCa- -3'
miRNA:   3'- -CGGACC-CGG-----------CGCgCGG---GGACuuUGcu -5'
29093 5' -61.4 NC_006146.1 + 92987 0.68 0.612148
Target:  5'- aCCUGcgaGGCCGCcCGCCCCUGcgccuguuAAGCa- -3'
miRNA:   3'- cGGAC---CCGGCGcGCGGGGAC--------UUUGcu -5'
29093 5' -61.4 NC_006146.1 + 93588 0.76 0.226875
Target:  5'- aGCCUGGGCaUGCGCgacccgccggGCUCCUGggGCu- -3'
miRNA:   3'- -CGGACCCG-GCGCG----------CGGGGACuuUGcu -5'
29093 5' -61.4 NC_006146.1 + 97859 0.67 0.651264
Target:  5'- ---gGGGCCGC-CGaCCCCgggccgUGGAACGAg -3'
miRNA:   3'- cggaCCCGGCGcGC-GGGG------ACUUUGCU- -5'
29093 5' -61.4 NC_006146.1 + 99369 0.81 0.096466
Target:  5'- cGCCcGGGCCGCGCGUugaggCCCaGGAGCGAg -3'
miRNA:   3'- -CGGaCCCGGCGCGCG-----GGGaCUUUGCU- -5'
29093 5' -61.4 NC_006146.1 + 101176 0.77 0.19697
Target:  5'- aCCUGGGCUGCcugGCCCUUGAAACGc -3'
miRNA:   3'- cGGACCCGGCGcg-CGGGGACUUUGCu -5'
29093 5' -61.4 NC_006146.1 + 102901 0.67 0.661026
Target:  5'- cGCCagGGGCCGUguggcguggcuGCGCCCCaaGAucGugGGc -3'
miRNA:   3'- -CGGa-CCCGGCG-----------CGCGGGGa-CU--UugCU- -5'
29093 5' -61.4 NC_006146.1 + 103118 0.67 0.641488
Target:  5'- aGCCUGGccGCCGUcaCGUCCCUGGc-CGAg -3'
miRNA:   3'- -CGGACC--CGGCGc-GCGGGGACUuuGCU- -5'
29093 5' -61.4 NC_006146.1 + 103582 0.71 0.424209
Target:  5'- gGCCUGGGCCGgGCucagcgcggacgugGCCCggGAGcugGCGGa -3'
miRNA:   3'- -CGGACCCGGCgCG--------------CGGGgaCUU---UGCU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.