miRNA display CGI


Results 61 - 80 of 137 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29093 5' -61.4 NC_006146.1 + 104185 0.68 0.602386
Target:  5'- aGUCgcaGGGCCGUcuGCGCCCCcacGggGCc- -3'
miRNA:   3'- -CGGa--CCCGGCG--CGCGGGGa--CuuUGcu -5'
29093 5' -61.4 NC_006146.1 + 105193 0.68 0.560718
Target:  5'- aCCgGGGCCGgGgaGCCgggggugcccggugCCUGAGACGAg -3'
miRNA:   3'- cGGaCCCGGCgCg-CGG--------------GGACUUUGCU- -5'
29093 5' -61.4 NC_006146.1 + 105881 0.66 0.718885
Target:  5'- cCCUGGGaCCGUagaagaGUGCCCauaaccaggGAAGCGGg -3'
miRNA:   3'- cGGACCC-GGCG------CGCGGGga-------CUUUGCU- -5'
29093 5' -61.4 NC_006146.1 + 109099 0.66 0.699786
Target:  5'- uGCCgu-GCCgGCGCGCCCacuuCUGuAACGAg -3'
miRNA:   3'- -CGGaccCGG-CGCGCGGG----GACuUUGCU- -5'
29093 5' -61.4 NC_006146.1 + 111748 0.7 0.452638
Target:  5'- -aCUGGG-UG-GCGUCCCUGAGGCGGg -3'
miRNA:   3'- cgGACCCgGCgCGCGGGGACUUUGCU- -5'
29093 5' -61.4 NC_006146.1 + 112397 0.66 0.709366
Target:  5'- cGCCgcagGGGCUGcCGUGCCUgUGGAu--- -3'
miRNA:   3'- -CGGa---CCCGGC-GCGCGGGgACUUugcu -5'
29093 5' -61.4 NC_006146.1 + 112703 0.7 0.461457
Target:  5'- gGUCUGGcCCGCagcaggGCGUCCCUGAGGCc- -3'
miRNA:   3'- -CGGACCcGGCG------CGCGGGGACUUUGcu -5'
29093 5' -61.4 NC_006146.1 + 115656 0.67 0.641488
Target:  5'- cGCCcGGGCCGCccggGCGacguaCCUGAgGGCGGa -3'
miRNA:   3'- -CGGaCCCGGCG----CGCgg---GGACU-UUGCU- -5'
29093 5' -61.4 NC_006146.1 + 117794 0.66 0.728337
Target:  5'- cCCcGGGCCGgGcCGCCUCcgGAcuaGACGGa -3'
miRNA:   3'- cGGaCCCGGCgC-GCGGGGa-CU---UUGCU- -5'
29093 5' -61.4 NC_006146.1 + 121155 1.1 0.000966
Target:  5'- gGCCUGGGCCGCGCGCCCCUGAAACGAg -3'
miRNA:   3'- -CGGACCCGGCGCGCGGGGACUUUGCU- -5'
29093 5' -61.4 NC_006146.1 + 123158 0.71 0.418316
Target:  5'- cGCCaGGGCgCGCGaggagGCCCCgGAcGACGAg -3'
miRNA:   3'- -CGGaCCCG-GCGCg----CGGGGaCU-UUGCU- -5'
29093 5' -61.4 NC_006146.1 + 123254 0.7 0.47936
Target:  5'- cGCgCUGGGCCGggcCGCGgCCa-GAGACGGc -3'
miRNA:   3'- -CG-GACCCGGC---GCGCgGGgaCUUUGCU- -5'
29093 5' -61.4 NC_006146.1 + 125955 0.74 0.266528
Target:  5'- cCCgGGGCCucccCGCGCCCCUGGccACGAg -3'
miRNA:   3'- cGGaCCCGGc---GCGCGGGGACUu-UGCU- -5'
29093 5' -61.4 NC_006146.1 + 127557 0.66 0.699786
Target:  5'- uGCCacGGGCUGCGCcugcuGgCCCUG-GGCGGc -3'
miRNA:   3'- -CGGa-CCCGGCGCG-----CgGGGACuUUGCU- -5'
29093 5' -61.4 NC_006146.1 + 128057 0.66 0.718885
Target:  5'- cGCgUGGGCCugGCG-GCCCUcGAGGCc- -3'
miRNA:   3'- -CGgACCCGG--CGCgCGGGGaCUUUGcu -5'
29093 5' -61.4 NC_006146.1 + 128544 0.67 0.641488
Target:  5'- cCCUGGcGgCGCGgGagaUCCUGGAGCGGc -3'
miRNA:   3'- cGGACC-CgGCGCgCg--GGGACUUUGCU- -5'
29093 5' -61.4 NC_006146.1 + 129680 0.71 0.425055
Target:  5'- cGCCUGGccaCGCGCGCCCagugcccgcggaUGggGCGc -3'
miRNA:   3'- -CGGACCcg-GCGCGCGGGg-----------ACuuUGCu -5'
29093 5' -61.4 NC_006146.1 + 130471 0.7 0.452638
Target:  5'- cGCCUacgGGGCCGCuGcCGCCCC-GGGugGc -3'
miRNA:   3'- -CGGA---CCCGGCG-C-GCGGGGaCUUugCu -5'
29093 5' -61.4 NC_006146.1 + 135186 0.78 0.154763
Target:  5'- gGCCggGGGCCGgGUGCCCCUGGGu--- -3'
miRNA:   3'- -CGGa-CCCGGCgCGCGGGGACUUugcu -5'
29093 5' -61.4 NC_006146.1 + 135279 0.78 0.154763
Target:  5'- gGCCggGGGCCGgGUGCCCCUGGGu--- -3'
miRNA:   3'- -CGGa-CCCGGCgCGCGGGGACUUugcu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.