miRNA display CGI


Results 41 - 60 of 137 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29093 5' -61.4 NC_006146.1 + 14386 0.69 0.506832
Target:  5'- uGUCUaGGGCCGgGagaggcaGCCCC-GAGGCGGg -3'
miRNA:   3'- -CGGA-CCCGGCgCg------CGGGGaCUUUGCU- -5'
29093 5' -61.4 NC_006146.1 + 101176 0.77 0.19697
Target:  5'- aCCUGGGCUGCcugGCCCUUGAAACGc -3'
miRNA:   3'- cGGACCCGGCGcg-CGGGGACUUUGCu -5'
29093 5' -61.4 NC_006146.1 + 136301 0.78 0.154763
Target:  5'- gGCCggGGGCCGgGUGCCCCUGGGu--- -3'
miRNA:   3'- -CGGa-CCCGGCgCGCGGGGACUUugcu -5'
29093 5' -61.4 NC_006146.1 + 167656 0.7 0.470365
Target:  5'- uGCCggGGGCCcggggGCGUGUCCCgcgacccgaGggGCGAg -3'
miRNA:   3'- -CGGa-CCCGG-----CGCGCGGGGa--------CuuUGCU- -5'
29093 5' -61.4 NC_006146.1 + 136208 0.78 0.154763
Target:  5'- gGCCggGGGCCGgGUGCCCCUGGGu--- -3'
miRNA:   3'- -CGGa-CCCGGCgCGCGGGGACUUugcu -5'
29093 5' -61.4 NC_006146.1 + 167412 0.68 0.573247
Target:  5'- gGCCUggcggGGGCCaGCGCgggGUCCC-GggGCGGg -3'
miRNA:   3'- -CGGA-----CCCGG-CGCG---CGGGGaCuuUGCU- -5'
29093 5' -61.4 NC_006146.1 + 136487 0.78 0.154763
Target:  5'- gGCCggGGGCCGgGUGCCCCUGGGu--- -3'
miRNA:   3'- -CGGa-CCCGGCgCGCGGGGACUUugcu -5'
29093 5' -61.4 NC_006146.1 + 162343 0.68 0.573247
Target:  5'- aGCCcGGGCUGCagcuaugaGCGCCUUgGAGAUGGa -3'
miRNA:   3'- -CGGaCCCGGCG--------CGCGGGGaCUUUGCU- -5'
29093 5' -61.4 NC_006146.1 + 44101 0.68 0.573247
Target:  5'- aCCUcGGGCCGCGCGCucggcgccgaaCCCgGAuGCa- -3'
miRNA:   3'- cGGA-CCCGGCGCGCG-----------GGGaCUuUGcu -5'
29093 5' -61.4 NC_006146.1 + 33197 0.69 0.54445
Target:  5'- uCCUGGGCCuccGgGUGCUCCUGguGCu- -3'
miRNA:   3'- cGGACCCGG---CgCGCGGGGACuuUGcu -5'
29093 5' -61.4 NC_006146.1 + 138874 0.69 0.534953
Target:  5'- aCCUGGGCCaGCGCcucGUCCC-GAGGCc- -3'
miRNA:   3'- cGGACCCGG-CGCG---CGGGGaCUUUGcu -5'
29093 5' -61.4 NC_006146.1 + 48233 0.69 0.516139
Target:  5'- cGCCUGGgugagcGCCGCGCggaggGCCCCcgccgccguccUGgcGCGAa -3'
miRNA:   3'- -CGGACC------CGGCGCG-----CGGGG-----------ACuuUGCU- -5'
29093 5' -61.4 NC_006146.1 + 20542 0.69 0.506832
Target:  5'- uGUCUaGGGCCGgGagaggcaGCCCC-GAGGCGGg -3'
miRNA:   3'- -CGGA-CCCGGCgCg------CGGGGaCUUUGCU- -5'
29093 5' -61.4 NC_006146.1 + 33377 0.7 0.461457
Target:  5'- cGCC-GGGCCGC-UGCCCCgcuccGGGugGGg -3'
miRNA:   3'- -CGGaCCCGGCGcGCGGGGa----CUUugCU- -5'
29093 5' -61.4 NC_006146.1 + 130471 0.7 0.452638
Target:  5'- cGCCUacgGGGCCGCuGcCGCCCC-GGGugGc -3'
miRNA:   3'- -CGGA---CCCGGCG-C-GCGGGGaCUUugCu -5'
29093 5' -61.4 NC_006146.1 + 167525 0.72 0.376935
Target:  5'- cGCC-GGGCCGCGCccccgGCCCCUcuccuggGAGGCc- -3'
miRNA:   3'- -CGGaCCCGGCGCG-----CGGGGA-------CUUUGcu -5'
29093 5' -61.4 NC_006146.1 + 33414 0.73 0.332624
Target:  5'- cGCCUGGGCacCGCuGCGCCgccgcucgguCCUGggGCu- -3'
miRNA:   3'- -CGGACCCG--GCG-CGCGG----------GGACuuUGcu -5'
29093 5' -61.4 NC_006146.1 + 137416 0.78 0.154763
Target:  5'- gGCCggGGGCCGgGUGCCCCUGGGu--- -3'
miRNA:   3'- -CGGa-CCCGGCgCGCGGGGACUUugcu -5'
29093 5' -61.4 NC_006146.1 + 137137 0.78 0.154763
Target:  5'- gGCCggGGGCCGgGUGCCCCUGGGu--- -3'
miRNA:   3'- -CGGa-CCCGGCgCGCGGGGACUUugcu -5'
29093 5' -61.4 NC_006146.1 + 136765 0.78 0.154763
Target:  5'- gGCCggGGGCCGgGUGCCCCUGGGu--- -3'
miRNA:   3'- -CGGa-CCCGGCgCGCGGGGACUUugcu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.