miRNA display CGI


Results 61 - 80 of 137 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29093 5' -61.4 NC_006146.1 + 45047 0.69 0.534953
Target:  5'- gGCCgGGGCCG-GCuCCCUaGggGCGGc -3'
miRNA:   3'- -CGGaCCCGGCgCGcGGGGaCuuUGCU- -5'
29093 5' -61.4 NC_006146.1 + 47743 0.68 0.563603
Target:  5'- uCCgGGGCCuccucGCGCGCCCU---GGCGAg -3'
miRNA:   3'- cGGaCCCGG-----CGCGCGGGGacuUUGCU- -5'
29093 5' -61.4 NC_006146.1 + 170320 0.72 0.376935
Target:  5'- cGCC-GGGCCGCGCccccgGCCCCUcuccuggGAGGCc- -3'
miRNA:   3'- -CGGaCCCGGCGCG-----CGGGGA-------CUUUGcu -5'
29093 5' -61.4 NC_006146.1 + 130471 0.7 0.452638
Target:  5'- cGCCUacgGGGCCGCuGcCGCCCC-GGGugGc -3'
miRNA:   3'- -CGGA---CCCGGCG-C-GCGGGGaCUUugCu -5'
29093 5' -61.4 NC_006146.1 + 33255 0.7 0.461457
Target:  5'- cGCC-GGGCCGC-UGCCCCgcuccGGGugGGg -3'
miRNA:   3'- -CGGaCCCGGCGcGCGGGGa----CUUugCU- -5'
29093 5' -61.4 NC_006146.1 + 33377 0.7 0.461457
Target:  5'- cGCC-GGGCCGC-UGCCCCgcuccGGGugGGg -3'
miRNA:   3'- -CGGaCCCGGCGcGCGGGGa----CUUugCU- -5'
29093 5' -61.4 NC_006146.1 + 167656 0.7 0.470365
Target:  5'- uGCCggGGGCCcggggGCGUGUCCCgcgacccgaGggGCGAg -3'
miRNA:   3'- -CGGa-CCCGG-----CGCGCGGGGa--------CuuUGCU- -5'
29093 5' -61.4 NC_006146.1 + 14386 0.69 0.506832
Target:  5'- uGUCUaGGGCCGgGagaggcaGCCCC-GAGGCGGg -3'
miRNA:   3'- -CGGA-CCCGGCgCg------CGGGGaCUUUGCU- -5'
29093 5' -61.4 NC_006146.1 + 20542 0.69 0.506832
Target:  5'- uGUCUaGGGCCGgGagaggcaGCCCC-GAGGCGGg -3'
miRNA:   3'- -CGGA-CCCGGCgCg------CGGGGaCUUUGCU- -5'
29093 5' -61.4 NC_006146.1 + 23620 0.69 0.506832
Target:  5'- uGUCUaGGGCCGgGagaggcaGCCCC-GAGGCGGg -3'
miRNA:   3'- -CGGA-CCCGGCgCg------CGGGGaCUUUGCU- -5'
29093 5' -61.4 NC_006146.1 + 128057 0.66 0.718885
Target:  5'- cGCgUGGGCCugGCG-GCCCUcGAGGCc- -3'
miRNA:   3'- -CGgACCCGG--CGCgCGGGGaCUUUGcu -5'
29093 5' -61.4 NC_006146.1 + 34075 0.67 0.670767
Target:  5'- gGCacgGGGCCGgGgGUCCCggGggGCa- -3'
miRNA:   3'- -CGga-CCCGGCgCgCGGGGa-CuuUGcu -5'
29093 5' -61.4 NC_006146.1 + 167412 0.68 0.573247
Target:  5'- gGCCUggcggGGGCCaGCGCgggGUCCC-GggGCGGg -3'
miRNA:   3'- -CGGA-----CCCGG-CGCG---CGGGGaCuuUGCU- -5'
29093 5' -61.4 NC_006146.1 + 170207 0.68 0.573247
Target:  5'- gGCCUggcggGGGCCaGCGCgggGUCCC-GggGCGGg -3'
miRNA:   3'- -CGGA-----CCCGG-CGCG---CGGGGaCuuUGCU- -5'
29093 5' -61.4 NC_006146.1 + 92987 0.68 0.612148
Target:  5'- aCCUGcgaGGCCGCcCGCCCCUGcgccuguuAAGCa- -3'
miRNA:   3'- cGGAC---CCGGCGcGCGGGGAC--------UUUGcu -5'
29093 5' -61.4 NC_006146.1 + 168202 0.67 0.621923
Target:  5'- gGCCcgGGGCCGCGCGUg---GGGAUGGc -3'
miRNA:   3'- -CGGa-CCCGGCGCGCGgggaCUUUGCU- -5'
29093 5' -61.4 NC_006146.1 + 170066 0.67 0.621923
Target:  5'- gGCCcgGGGCCGCGCGUg---GGGAUGGc -3'
miRNA:   3'- -CGGa-CCCGGCGCGCGgggaCUUUGCU- -5'
29093 5' -61.4 NC_006146.1 + 139141 0.67 0.62877
Target:  5'- gGCCgaacggGGGCUcccgucccccggggGgGCGCCUgUGAGGCGGc -3'
miRNA:   3'- -CGGa-----CCCGG--------------CgCGCGGGgACUUUGCU- -5'
29093 5' -61.4 NC_006146.1 + 97859 0.67 0.651264
Target:  5'- ---gGGGCCGC-CGaCCCCgggccgUGGAACGAg -3'
miRNA:   3'- cggaCCCGGCGcGC-GGGG------ACUUUGCU- -5'
29093 5' -61.4 NC_006146.1 + 48039 0.67 0.661026
Target:  5'- gGCCggcucGGGUCGUccaGCGCCCCgGGcAGCGu -3'
miRNA:   3'- -CGGa----CCCGGCG---CGCGGGGaCU-UUGCu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.