miRNA display CGI


Results 41 - 60 of 137 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29093 5' -61.4 NC_006146.1 + 41873 0.68 0.592645
Target:  5'- aGCUcGGGCUGCGCcguGCCCCgGAccUGAg -3'
miRNA:   3'- -CGGaCCCGGCGCG---CGGGGaCUuuGCU- -5'
29093 5' -61.4 NC_006146.1 + 40980 0.68 0.612148
Target:  5'- cGCCgUGGuGCCGCGCcggcGCCCCagGgcGCa- -3'
miRNA:   3'- -CGG-ACC-CGGCGCG----CGGGGa-CuuUGcu -5'
29093 5' -61.4 NC_006146.1 + 15312 0.67 0.630727
Target:  5'- gGCCgGaGGCCagccccgGUGUGCCCCUGGcgGGCGc -3'
miRNA:   3'- -CGGaC-CCGG-------CGCGCGGGGACU--UUGCu -5'
29093 5' -61.4 NC_006146.1 + 71531 0.67 0.631706
Target:  5'- uCCUGGGCCucaacGCGCGgCCCgGGcgccGACGc -3'
miRNA:   3'- cGGACCCGG-----CGCGCgGGGaCU----UUGCu -5'
29093 5' -61.4 NC_006146.1 + 103118 0.67 0.641488
Target:  5'- aGCCUGGccGCCGUcaCGUCCCUGGc-CGAg -3'
miRNA:   3'- -CGGACC--CGGCGc-GCGGGGACUuuGCU- -5'
29093 5' -61.4 NC_006146.1 + 115656 0.67 0.641488
Target:  5'- cGCCcGGGCCGCccggGCGacguaCCUGAgGGCGGa -3'
miRNA:   3'- -CGGaCCCGGCG----CGCgg---GGACU-UUGCU- -5'
29093 5' -61.4 NC_006146.1 + 41528 0.67 0.651264
Target:  5'- cGCCcGGGauCCGCGgGCUccuCCUGAGGCu- -3'
miRNA:   3'- -CGGaCCC--GGCGCgCGG---GGACUUUGcu -5'
29093 5' -61.4 NC_006146.1 + 56671 0.67 0.651264
Target:  5'- cCCUgaGGuGCCGgGC-CCCCUGggGCu- -3'
miRNA:   3'- cGGA--CC-CGGCgCGcGGGGACuuUGcu -5'
29093 5' -61.4 NC_006146.1 + 77312 0.67 0.651264
Target:  5'- aGCCcggcGGGUCGCGCauGCCCaggCUGAuggugaagGACGAg -3'
miRNA:   3'- -CGGa---CCCGGCGCG--CGGG---GACU--------UUGCU- -5'
29093 5' -61.4 NC_006146.1 + 135651 0.78 0.154763
Target:  5'- gGCCggGGGCCGgGUGCCCCUGGGu--- -3'
miRNA:   3'- -CGGa-CCCGGCgCGCGGGGACUUugcu -5'
29093 5' -61.4 NC_006146.1 + 135743 0.78 0.154763
Target:  5'- gGCCggGGGCCGgGUGCCCCUGGGu--- -3'
miRNA:   3'- -CGGa-CCCGGCgCGCGGGGACUUugcu -5'
29093 5' -61.4 NC_006146.1 + 135836 0.78 0.154763
Target:  5'- gGCCggGGGCCGgGUGCCCCUGGGu--- -3'
miRNA:   3'- -CGGa-CCCGGCgCGCGGGGACUUugcu -5'
29093 5' -61.4 NC_006146.1 + 135929 0.78 0.154763
Target:  5'- gGCCggGGGCCGgGUGCCCCUGGGu--- -3'
miRNA:   3'- -CGGa-CCCGGCgCGCGGGGACUUugcu -5'
29093 5' -61.4 NC_006146.1 + 135558 0.78 0.154763
Target:  5'- gGCCggGGGCCGgGUGCCCCUGGGu--- -3'
miRNA:   3'- -CGGa-CCCGGCgCGCGGGGACUUugcu -5'
29093 5' -61.4 NC_006146.1 + 135465 0.78 0.154763
Target:  5'- gGCCggGGGCCGgGUGCCCCUGGGu--- -3'
miRNA:   3'- -CGGa-CCCGGCgCGCGGGGACUUugcu -5'
29093 5' -61.4 NC_006146.1 + 135372 0.78 0.154763
Target:  5'- gGCCggGGGCCGgGUGCCCCUGGGu--- -3'
miRNA:   3'- -CGGa-CCCGGCgCGCGGGGACUUugcu -5'
29093 5' -61.4 NC_006146.1 + 135279 0.78 0.154763
Target:  5'- gGCCggGGGCCGgGUGCCCCUGGGu--- -3'
miRNA:   3'- -CGGa-CCCGGCgCGCGGGGACUUugcu -5'
29093 5' -61.4 NC_006146.1 + 135186 0.78 0.154763
Target:  5'- gGCCggGGGCCGgGUGCCCCUGGGu--- -3'
miRNA:   3'- -CGGa-CCCGGCgCGCGGGGACUUugcu -5'
29093 5' -61.4 NC_006146.1 + 99369 0.81 0.096466
Target:  5'- cGCCcGGGCCGCGCGUugaggCCCaGGAGCGAg -3'
miRNA:   3'- -CGGaCCCGGCGCGCG-----GGGaCUUUGCU- -5'
29093 5' -61.4 NC_006146.1 + 128057 0.66 0.718885
Target:  5'- cGCgUGGGCCugGCG-GCCCUcGAGGCc- -3'
miRNA:   3'- -CGgACCCGG--CGCgCGGGGaCUUUGcu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.