miRNA display CGI


Results 1 - 20 of 43 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29094 5' -61.1 NC_006146.1 + 118955 0.66 0.756961
Target:  5'- cGGCGCCaGUUggCGcgCAgaccgcacCGGGGCCGc -3'
miRNA:   3'- -CCGCGGgCGAa-GCaaGU--------GCCCCGGCa -5'
29094 5' -61.1 NC_006146.1 + 135715 0.66 0.747807
Target:  5'- cGgGUCCGCUgccCGUcCuggagcuCGGGGCCGg -3'
miRNA:   3'- cCgCGGGCGAa--GCAaGu------GCCCCGGCa -5'
29094 5' -61.1 NC_006146.1 + 137946 0.66 0.747807
Target:  5'- cGCGCCC----CGUUCACGGGGgaGg -3'
miRNA:   3'- cCGCGGGcgaaGCAAGUGCCCCggCa -5'
29094 5' -61.1 NC_006146.1 + 34115 0.66 0.747807
Target:  5'- cGCGCCC----CGUUCACGGGGgaGg -3'
miRNA:   3'- cCGCGGGcgaaGCAAGUGCCCCggCa -5'
29094 5' -61.1 NC_006146.1 + 72565 0.66 0.738561
Target:  5'- gGGCGCCgGCgUgGUgCugGGGcuuGCCGg -3'
miRNA:   3'- -CCGCGGgCGaAgCAaGugCCC---CGGCa -5'
29094 5' -61.1 NC_006146.1 + 167309 0.66 0.738561
Target:  5'- cGGCGCCUGCa--Ggg---GGGGCCGg -3'
miRNA:   3'- -CCGCGGGCGaagCaagugCCCCGGCa -5'
29094 5' -61.1 NC_006146.1 + 168241 0.66 0.738561
Target:  5'- cGGCGCCUGCa--Ggg---GGGGCCGg -3'
miRNA:   3'- -CCGCGGGCGaagCaagugCCCCGGCa -5'
29094 5' -61.1 NC_006146.1 + 169173 0.66 0.738561
Target:  5'- cGGCGCCUGCa--Ggg---GGGGCCGg -3'
miRNA:   3'- -CCGCGGGCGaagCaagugCCCCGGCa -5'
29094 5' -61.1 NC_006146.1 + 53793 0.66 0.719824
Target:  5'- gGGCcucgGCCCGCgcggCGUccauagCGgGGGGCUGg -3'
miRNA:   3'- -CCG----CGGGCGaa--GCAa-----GUgCCCCGGCa -5'
29094 5' -61.1 NC_006146.1 + 110852 0.66 0.719824
Target:  5'- cGGCGCCCgaucagagggacGCUgcgucucgggcUCGggCgcaggcggggACGGGGCCGc -3'
miRNA:   3'- -CCGCGGG------------CGA-----------AGCaaG----------UGCCCCGGCa -5'
29094 5' -61.1 NC_006146.1 + 41047 0.66 0.719824
Target:  5'- -cCGUCCGCggCGgccCugGGGGCCu- -3'
miRNA:   3'- ccGCGGGCGaaGCaa-GugCCCCGGca -5'
29094 5' -61.1 NC_006146.1 + 57909 0.66 0.71035
Target:  5'- aGGCcgaGUCCGUcaCGcgCACGGuGGCCGa -3'
miRNA:   3'- -CCG---CGGGCGaaGCaaGUGCC-CCGGCa -5'
29094 5' -61.1 NC_006146.1 + 24982 0.66 0.71035
Target:  5'- cGUGCUCGUUUCuGUUCuuUGGGGCgGa -3'
miRNA:   3'- cCGCGGGCGAAG-CAAGu-GCCCCGgCa -5'
29094 5' -61.1 NC_006146.1 + 120903 0.66 0.71035
Target:  5'- uGGUGCCCccCUUCGUgCACaauguGGcGGCCGg -3'
miRNA:   3'- -CCGCGGGc-GAAGCAaGUG-----CC-CCGGCa -5'
29094 5' -61.1 NC_006146.1 + 104192 0.67 0.700815
Target:  5'- gGGcCGUCUGCgcccc-CACGGGGCCGc -3'
miRNA:   3'- -CC-GCGGGCGaagcaaGUGCCCCGGCa -5'
29094 5' -61.1 NC_006146.1 + 42714 0.67 0.690267
Target:  5'- aGCGCCCGC-UCGggCugGcagccgcggauccGGGCgGUg -3'
miRNA:   3'- cCGCGGGCGaAGCaaGugC-------------CCCGgCA- -5'
29094 5' -61.1 NC_006146.1 + 127567 0.67 0.681596
Target:  5'- uGCGCCUGCUggcc-CugGGcGGCCGa -3'
miRNA:   3'- cCGCGGGCGAagcaaGugCC-CCGGCa -5'
29094 5' -61.1 NC_006146.1 + 159732 0.67 0.65251
Target:  5'- uGGCGCCCGCcuuugaagcaauUUCGgccccuguguuUUUACcuGGGCCGg -3'
miRNA:   3'- -CCGCGGGCG------------AAGC-----------AAGUGc-CCCGGCa -5'
29094 5' -61.1 NC_006146.1 + 113499 0.67 0.65251
Target:  5'- aGGCGUgCGUcggcCGggcacggUCGCGGGGCCa- -3'
miRNA:   3'- -CCGCGgGCGaa--GCa------AGUGCCCCGGca -5'
29094 5' -61.1 NC_006146.1 + 33115 0.68 0.642776
Target:  5'- uGGcCGCCgGCgg-GUUCGCcGGGCCGc -3'
miRNA:   3'- -CC-GCGGgCGaagCAAGUGcCCCGGCa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.