miRNA display CGI


Results 1 - 20 of 96 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29095 3' -62.7 NC_006146.1 + 151384 0.66 0.689115
Target:  5'- aCgaGUCC-CGCuGCuGcAGGCGGGGGa -3'
miRNA:   3'- -GgaCAGGuGCGuCGcCcUCCGCCCCU- -5'
29095 3' -62.7 NC_006146.1 + 2469 0.66 0.689115
Target:  5'- --gGUCUuugGCGguGUGGccGGCGGGGGc -3'
miRNA:   3'- ggaCAGG---UGCguCGCCcuCCGCCCCU- -5'
29095 3' -62.7 NC_006146.1 + 135763 0.66 0.689115
Target:  5'- -gUGUgCCACGguGaGGcAGGCGGGGc -3'
miRNA:   3'- ggACA-GGUGCguCgCCcUCCGCCCCu -5'
29095 3' -62.7 NC_006146.1 + 170517 0.66 0.689115
Target:  5'- -----gCGCGCGGCGGGcgGGGCcugaGGGGGc -3'
miRNA:   3'- ggacagGUGCGUCGCCC--UCCG----CCCCU- -5'
29095 3' -62.7 NC_006146.1 + 399 0.66 0.679573
Target:  5'- cCCg--CCGCGC-GCuGGGGGUccGGGGAa -3'
miRNA:   3'- -GGacaGGUGCGuCGcCCUCCG--CCCCU- -5'
29095 3' -62.7 NC_006146.1 + 128148 0.66 0.67383
Target:  5'- aCCUGUCgGCccugcugccGCAGgcgaugcagcgacgcCGGGAGGCggcccaGGGGGg -3'
miRNA:   3'- -GGACAGgUG---------CGUC---------------GCCCUCCG------CCCCU- -5'
29095 3' -62.7 NC_006146.1 + 34004 0.66 0.669995
Target:  5'- aCCUGga-AgGCAGgGGGGGGguCGGGGc -3'
miRNA:   3'- -GGACaggUgCGUCgCCCUCC--GCCCCu -5'
29095 3' -62.7 NC_006146.1 + 136690 0.66 0.669995
Target:  5'- cCCUggGUCCGCuGCcccgcuccGGCGGGGGGUGGccGGc -3'
miRNA:   3'- -GGA--CAGGUG-CG--------UCGCCCUCCGCC--CCu -5'
29095 3' -62.7 NC_006146.1 + 39892 0.66 0.669995
Target:  5'- gCUGagcggCCuGCGgGGCGGGAaacgacgaggagGGUGGGGGa -3'
miRNA:   3'- gGACa----GG-UGCgUCGCCCU------------CCGCCCCU- -5'
29095 3' -62.7 NC_006146.1 + 50715 0.66 0.669995
Target:  5'- gCCUGaaagCCgGCGUugAGCGGGGGcGaCGGGGc -3'
miRNA:   3'- -GGACa---GG-UGCG--UCGCCCUC-C-GCCCCu -5'
29095 3' -62.7 NC_006146.1 + 122181 0.66 0.66039
Target:  5'- gCUG-CUGCGCgAGCGGGAGGCcagagagcGGacGGAg -3'
miRNA:   3'- gGACaGGUGCG-UCGCCCUCCG--------CC--CCU- -5'
29095 3' -62.7 NC_006146.1 + 170150 0.66 0.66039
Target:  5'- gCUG-CaCGCGCGGCGGcgccGGCcGGGGGc -3'
miRNA:   3'- gGACaG-GUGCGUCGCCcu--CCG-CCCCU- -5'
29095 3' -62.7 NC_006146.1 + 169219 0.66 0.66039
Target:  5'- gCUG-CaCGCGCGGCGGcgccGGCcGGGGGc -3'
miRNA:   3'- gGACaG-GUGCGUCGCCcu--CCG-CCCCU- -5'
29095 3' -62.7 NC_006146.1 + 168287 0.66 0.66039
Target:  5'- gCUG-CaCGCGCGGCGGcgccGGCcGGGGGc -3'
miRNA:   3'- gGACaG-GUGCGUCGCCcu--CCG-CCCCU- -5'
29095 3' -62.7 NC_006146.1 + 83747 0.66 0.66039
Target:  5'- cCCUGUgggCCGugaGCAGUGGGuGGCcugguGGGAg -3'
miRNA:   3'- -GGACA---GGUg--CGUCGCCCuCCGc----CCCU- -5'
29095 3' -62.7 NC_006146.1 + 167355 0.66 0.66039
Target:  5'- gCUG-CaCGCGCGGCGGcgccGGCcGGGGGc -3'
miRNA:   3'- gGACaG-GUGCGUCGCCcu--CCG-CCCCU- -5'
29095 3' -62.7 NC_006146.1 + 117160 0.66 0.641127
Target:  5'- gCCcGUCUucgccccgGCGCAGCcgcggcucccGGaGAGGaCGGGGAa -3'
miRNA:   3'- -GGaCAGG--------UGCGUCG----------CC-CUCC-GCCCCU- -5'
29095 3' -62.7 NC_006146.1 + 123508 0.66 0.641127
Target:  5'- cCCUGgCCACGgucgaccccaGGCGGGucGCGGGuGGc -3'
miRNA:   3'- -GGACaGGUGCg---------UCGCCCucCGCCC-CU- -5'
29095 3' -62.7 NC_006146.1 + 89055 0.66 0.639199
Target:  5'- gUUGU-CGCGUugguuaaacaGGGAGGCGGGGGa -3'
miRNA:   3'- gGACAgGUGCGucg-------CCCUCCGCCCCU- -5'
29095 3' -62.7 NC_006146.1 + 69507 0.66 0.638234
Target:  5'- aCCUG-CCAaagauCGuCGGCcuguggugaggaauGGGGGGUGGGGGc -3'
miRNA:   3'- -GGACaGGU-----GC-GUCG--------------CCCUCCGCCCCU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.