miRNA display CGI


Results 1 - 20 of 29 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29095 5' -57.1 NC_006146.1 + 47894 0.66 0.877938
Target:  5'- -uUCCUUGggcgCUCUCUCUGGAGAGg -3'
miRNA:   3'- guAGGGACaggaGGGAGAGGUCUCUC- -5'
29095 5' -57.1 NC_006146.1 + 27790 0.66 0.870778
Target:  5'- aCAggCCCUGcCuCUCCCUCUacagucCCAGAGu- -3'
miRNA:   3'- -GUa-GGGACaG-GAGGGAGA------GGUCUCuc -5'
29095 5' -57.1 NC_006146.1 + 24712 0.66 0.870778
Target:  5'- aCAggCCCUGcCuCUCCCUCUacagucCCAGAGu- -3'
miRNA:   3'- -GUa-GGGACaG-GAGGGAGA------GGUCUCuc -5'
29095 5' -57.1 NC_006146.1 + 18556 0.66 0.870778
Target:  5'- aCAggCCCUGcCuCUCCCUCUacagucCCAGAGu- -3'
miRNA:   3'- -GUa-GGGACaG-GAGGGAGA------GGUCUCuc -5'
29095 5' -57.1 NC_006146.1 + 15478 0.66 0.870778
Target:  5'- aCAggCCCUGcCuCUCCCUCUacagucCCAGAGu- -3'
miRNA:   3'- -GUa-GGGACaG-GAGGGAGA------GGUCUCuc -5'
29095 5' -57.1 NC_006146.1 + 12399 0.66 0.870778
Target:  5'- aCAggCCCUGcCuCUCCCUCUacagucCCAGAGu- -3'
miRNA:   3'- -GUa-GGGACaG-GAGGGAGA------GGUCUCuc -5'
29095 5' -57.1 NC_006146.1 + 21634 0.66 0.870778
Target:  5'- aCAggCCCUGcCuCUCCCUCUacagucCCAGAGu- -3'
miRNA:   3'- -GUa-GGGACaG-GAGGGAGA------GGUCUCuc -5'
29095 5' -57.1 NC_006146.1 + 51255 0.66 0.863409
Target:  5'- --cCCUUGUCCUgaUCUC-CCGGAGGGu -3'
miRNA:   3'- guaGGGACAGGAg-GGAGaGGUCUCUC- -5'
29095 5' -57.1 NC_006146.1 + 50763 0.66 0.863409
Target:  5'- cCGUCCUcGUCCUCgCUCUCCucGGuGg -3'
miRNA:   3'- -GUAGGGaCAGGAGgGAGAGGucUCuC- -5'
29095 5' -57.1 NC_006146.1 + 105250 0.67 0.848067
Target:  5'- --cCCCUuUUCUCUCUCccaCCAGAGAGc -3'
miRNA:   3'- guaGGGAcAGGAGGGAGa--GGUCUCUC- -5'
29095 5' -57.1 NC_006146.1 + 134671 0.67 0.845699
Target:  5'- gCcgCCCUGccUCCUCCCcggccggcuugcgcUC-CCGGGGAGc -3'
miRNA:   3'- -GuaGGGAC--AGGAGGG--------------AGaGGUCUCUC- -5'
29095 5' -57.1 NC_006146.1 + 162647 0.67 0.823639
Target:  5'- -cUCCCUcccCCUCCCuacUCUCCAcAGAGg -3'
miRNA:   3'- guAGGGAca-GGAGGG---AGAGGUcUCUC- -5'
29095 5' -57.1 NC_006146.1 + 129753 0.67 0.815147
Target:  5'- --cCCCgaccaGUCCUCguCC-CUCCAGGGAGc -3'
miRNA:   3'- guaGGGa----CAGGAG--GGaGAGGUCUCUC- -5'
29095 5' -57.1 NC_006146.1 + 127644 0.68 0.786016
Target:  5'- gCcgCCCUGUgCCUCUcggugggcuaucugCUgCUCCAGGGGGg -3'
miRNA:   3'- -GuaGGGACA-GGAGG--------------GA-GAGGUCUCUC- -5'
29095 5' -57.1 NC_006146.1 + 12549 0.69 0.761075
Target:  5'- -cUCUCUGUCCUCCCcgccUCUCCcacGAGc -3'
miRNA:   3'- guAGGGACAGGAGGG----AGAGGucuCUC- -5'
29095 5' -57.1 NC_006146.1 + 15628 0.69 0.761075
Target:  5'- -cUCUCUGUCCUCCCcgccUCUCCcacGAGc -3'
miRNA:   3'- guAGGGACAGGAGGG----AGAGGucuCUC- -5'
29095 5' -57.1 NC_006146.1 + 18706 0.69 0.761075
Target:  5'- -cUCUCUGUCCUCCCcgccUCUCCcacGAGc -3'
miRNA:   3'- guAGGGACAGGAGGG----AGAGGucuCUC- -5'
29095 5' -57.1 NC_006146.1 + 21784 0.69 0.761075
Target:  5'- -cUCUCUGUCCUCCCcgccUCUCCcacGAGc -3'
miRNA:   3'- guAGGGACAGGAGGG----AGAGGucuCUC- -5'
29095 5' -57.1 NC_006146.1 + 24862 0.69 0.761075
Target:  5'- -cUCUCUGUCCUCCCcgccUCUCCcacGAGc -3'
miRNA:   3'- guAGGGACAGGAGGG----AGAGGucuCUC- -5'
29095 5' -57.1 NC_006146.1 + 56121 0.69 0.721707
Target:  5'- uGUCUCUGUCCUCUCgUCUCUAuaccgauGAGAu -3'
miRNA:   3'- gUAGGGACAGGAGGG-AGAGGU-------CUCUc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.