miRNA display CGI


Results 1 - 17 of 17 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29096 3' -51.3 NC_006146.1 + 80021 0.66 0.99446
Target:  5'- aGGUUgagggCCAGGCUcgGGUGcauaGCCa -3'
miRNA:   3'- -UCGAagua-GGUCUGAuaCCACag--CGG- -5'
29096 3' -51.3 NC_006146.1 + 22151 0.66 0.99446
Target:  5'- cGGC-UCAUCCcuACUcUGGcaagGUCGCUa -3'
miRNA:   3'- -UCGaAGUAGGucUGAuACCa---CAGCGG- -5'
29096 3' -51.3 NC_006146.1 + 136622 0.66 0.992396
Target:  5'- cAGCgUCGUCCAGACgcucggggGGUGcacaacccccaGCCg -3'
miRNA:   3'- -UCGaAGUAGGUCUGaua-----CCACag---------CGG- -5'
29096 3' -51.3 NC_006146.1 + 32792 0.66 0.992396
Target:  5'- cAGCgUCGUCCAGACgcucggggGGUGcacaacccccaGCCg -3'
miRNA:   3'- -UCGaAGUAGGUCUGaua-----CCACag---------CGG- -5'
29096 3' -51.3 NC_006146.1 + 50442 0.66 0.991509
Target:  5'- aAGCUUCGcggCCAGAUgcaUGUGGaauUCGCUc -3'
miRNA:   3'- -UCGAAGUa--GGUCUG---AUACCac-AGCGG- -5'
29096 3' -51.3 NC_006146.1 + 115286 0.66 0.991509
Target:  5'- aGGCggCAUCCGGGCg--GGaGUgGUCa -3'
miRNA:   3'- -UCGaaGUAGGUCUGauaCCaCAgCGG- -5'
29096 3' -51.3 NC_006146.1 + 167626 0.66 0.991509
Target:  5'- uGCUUUAUCCcccGGCUcGUGGccUG-CGCCg -3'
miRNA:   3'- uCGAAGUAGGu--CUGA-UACC--ACaGCGG- -5'
29096 3' -51.3 NC_006146.1 + 102370 0.66 0.990287
Target:  5'- uGCcccCAUCCAcguuGGCUAUGGaguugacucGUCGCCg -3'
miRNA:   3'- uCGaa-GUAGGU----CUGAUACCa--------CAGCGG- -5'
29096 3' -51.3 NC_006146.1 + 161403 0.67 0.988932
Target:  5'- aAGCUgcagaUCAUaggccugugCCAGGCg--GGUGUgGCCc -3'
miRNA:   3'- -UCGA-----AGUA---------GGUCUGauaCCACAgCGG- -5'
29096 3' -51.3 NC_006146.1 + 30308 0.67 0.988932
Target:  5'- cAGUUUCcccuUCCAgGGCUAUuccuaGUGUUGCCa -3'
miRNA:   3'- -UCGAAGu---AGGU-CUGAUAc----CACAGCGG- -5'
29096 3' -51.3 NC_006146.1 + 59898 0.67 0.985785
Target:  5'- aGGCccCGUCCAGAaagagguUGGUgGUCGCUc -3'
miRNA:   3'- -UCGaaGUAGGUCUgau----ACCA-CAGCGG- -5'
29096 3' -51.3 NC_006146.1 + 168285 0.67 0.983975
Target:  5'- aAGCcgugC-UCCAGACUGU-GUGUUGCUu -3'
miRNA:   3'- -UCGaa--GuAGGUCUGAUAcCACAGCGG- -5'
29096 3' -51.3 NC_006146.1 + 165095 0.68 0.971636
Target:  5'- gAGCUgggacuggcCCAGACUAUGGUcugCGCUg -3'
miRNA:   3'- -UCGAagua-----GGUCUGAUACCAca-GCGG- -5'
29096 3' -51.3 NC_006146.1 + 54380 0.69 0.955213
Target:  5'- aGGUggg--CCAGACgauggGUGGUGcCGCCu -3'
miRNA:   3'- -UCGaaguaGGUCUGa----UACCACaGCGG- -5'
29096 3' -51.3 NC_006146.1 + 102926 0.69 0.951116
Target:  5'- aGGCUUCAUCCu-GCgucagcaGGUaGUCGCCc -3'
miRNA:   3'- -UCGAAGUAGGucUGaua----CCA-CAGCGG- -5'
29096 3' -51.3 NC_006146.1 + 108713 0.7 0.942189
Target:  5'- uAGCUUCuggcUCCguGGGCgugcUGGUGUcCGCCu -3'
miRNA:   3'- -UCGAAGu---AGG--UCUGau--ACCACA-GCGG- -5'
29096 3' -51.3 NC_006146.1 + 125082 1.14 0.004577
Target:  5'- cAGCUUCAUCCAGACUAUGGUGUCGCCg -3'
miRNA:   3'- -UCGAAGUAGGUCUGAUACCACAGCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.