miRNA display CGI


Results 1 - 20 of 26 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29096 5' -46.2 NC_006146.1 + 109340 0.66 0.999981
Target:  5'- -cAGCGUGGCCc---UCgGggUGggGa -3'
miRNA:   3'- auUUGCACCGGucauAGaCuuACuuC- -5'
29096 5' -46.2 NC_006146.1 + 57341 0.66 0.999981
Target:  5'- gGGGCGgGGCCccgGGUGUCg--GUGAGGg -3'
miRNA:   3'- aUUUGCaCCGG---UCAUAGacuUACUUC- -5'
29096 5' -46.2 NC_006146.1 + 75060 0.66 0.999974
Target:  5'- gGAGCcggGGCCAGUAcaggaUCUGGAgccGggGc -3'
miRNA:   3'- aUUUGca-CCGGUCAU-----AGACUUa--CuuC- -5'
29096 5' -46.2 NC_006146.1 + 33028 0.66 0.999974
Target:  5'- aAAGCG-GGCUAGgcguaggGAGUGAGGg -3'
miRNA:   3'- aUUUGCaCCGGUCauaga--CUUACUUC- -5'
29096 5' -46.2 NC_006146.1 + 75108 0.66 0.999974
Target:  5'- gGAACcggGGCCAGUAcaggaUCUGGAgccGggGc -3'
miRNA:   3'- aUUUGca-CCGGUCAU-----AGACUUa--CuuC- -5'
29096 5' -46.2 NC_006146.1 + 166551 0.66 0.999964
Target:  5'- ---cCGUGGCCAcGUcgCUGAA-GAGc -3'
miRNA:   3'- auuuGCACCGGU-CAuaGACUUaCUUc -5'
29096 5' -46.2 NC_006146.1 + 114915 0.66 0.999964
Target:  5'- aUGGAUGggGGCguGUGUCUGuuUGAc- -3'
miRNA:   3'- -AUUUGCa-CCGguCAUAGACuuACUuc -5'
29096 5' -46.2 NC_006146.1 + 104690 0.66 0.999935
Target:  5'- cGGACGUGGCCuuuccaAUCUGAAUc--- -3'
miRNA:   3'- aUUUGCACCGGuca---UAGACUUAcuuc -5'
29096 5' -46.2 NC_006146.1 + 153382 0.67 0.999913
Target:  5'- gGAugGUGGCCGG-AUUgu--UGAGGg -3'
miRNA:   3'- aUUugCACCGGUCaUAGacuuACUUC- -5'
29096 5' -46.2 NC_006146.1 + 168331 0.67 0.999913
Target:  5'- aGGGCGgGGCCGGggcCUGGcgGggGc -3'
miRNA:   3'- aUUUGCaCCGGUCauaGACUuaCuuC- -5'
29096 5' -46.2 NC_006146.1 + 167399 0.67 0.999913
Target:  5'- aGGGCGgGGCCGGggcCUGGcgGggGc -3'
miRNA:   3'- aUUUGCaCCGGUCauaGACUuaCuuC- -5'
29096 5' -46.2 NC_006146.1 + 170194 0.67 0.999913
Target:  5'- aGGGCGgGGCCGGggcCUGGcgGggGc -3'
miRNA:   3'- aUUUGCaCCGGUCauaGACUuaCuuC- -5'
29096 5' -46.2 NC_006146.1 + 169263 0.67 0.999913
Target:  5'- aGGGCGgGGCCGGggcCUGGcgGggGc -3'
miRNA:   3'- aUUUGCaCCGGUCauaGACUuaCuuC- -5'
29096 5' -46.2 NC_006146.1 + 9679 0.67 0.999806
Target:  5'- gAGAUGuUGGCCGugGUCaGGAUGAGGa -3'
miRNA:   3'- aUUUGC-ACCGGUcaUAGaCUUACUUC- -5'
29096 5' -46.2 NC_006146.1 + 56395 0.67 0.99975
Target:  5'- gUAAGCGUGGCCGcUcgCgaGggUGAGa -3'
miRNA:   3'- -AUUUGCACCGGUcAuaGa-CuuACUUc -5'
29096 5' -46.2 NC_006146.1 + 130232 0.67 0.99975
Target:  5'- gGGugGUGGCCAGgccgUUGu-UGGAGa -3'
miRNA:   3'- aUUugCACCGGUCaua-GACuuACUUC- -5'
29096 5' -46.2 NC_006146.1 + 47670 0.68 0.999489
Target:  5'- --cGCGgcGGCCAGgGUCucgUGGAUGGAGg -3'
miRNA:   3'- auuUGCa-CCGGUCaUAG---ACUUACUUC- -5'
29096 5' -46.2 NC_006146.1 + 44784 0.68 0.999489
Target:  5'- gGAACccaGGCCGGggAUCUGGAUGGu- -3'
miRNA:   3'- aUUUGca-CCGGUCa-UAGACUUACUuc -5'
29096 5' -46.2 NC_006146.1 + 46530 0.69 0.998797
Target:  5'- ---cUGUGGCCGGUGUaggGAagGggGg -3'
miRNA:   3'- auuuGCACCGGUCAUAga-CUuaCuuC- -5'
29096 5' -46.2 NC_006146.1 + 111642 0.69 0.998533
Target:  5'- aAGACGUcGGCCAGgccCUGAacacccaggcccAUGGAGg -3'
miRNA:   3'- aUUUGCA-CCGGUCauaGACU------------UACUUC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.