Results 1 - 20 of 26 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
29096 | 5' | -46.2 | NC_006146.1 | + | 170194 | 0.67 | 0.999913 |
Target: 5'- aGGGCGgGGCCGGggcCUGGcgGggGc -3' miRNA: 3'- aUUUGCaCCGGUCauaGACUuaCuuC- -5' |
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29096 | 5' | -46.2 | NC_006146.1 | + | 169263 | 0.67 | 0.999913 |
Target: 5'- aGGGCGgGGCCGGggcCUGGcgGggGc -3' miRNA: 3'- aUUUGCaCCGGUCauaGACUuaCuuC- -5' |
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29096 | 5' | -46.2 | NC_006146.1 | + | 168331 | 0.67 | 0.999913 |
Target: 5'- aGGGCGgGGCCGGggcCUGGcgGggGc -3' miRNA: 3'- aUUUGCaCCGGUCauaGACUuaCuuC- -5' |
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29096 | 5' | -46.2 | NC_006146.1 | + | 167399 | 0.67 | 0.999913 |
Target: 5'- aGGGCGgGGCCGGggcCUGGcgGggGc -3' miRNA: 3'- aUUUGCaCCGGUCauaGACUuaCuuC- -5' |
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29096 | 5' | -46.2 | NC_006146.1 | + | 166551 | 0.66 | 0.999964 |
Target: 5'- ---cCGUGGCCAcGUcgCUGAA-GAGc -3' miRNA: 3'- auuuGCACCGGU-CAuaGACUUaCUUc -5' |
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29096 | 5' | -46.2 | NC_006146.1 | + | 159814 | 0.78 | 0.842909 |
Target: 5'- gUAAACGUGGUgGGUAUCgcGggUGggGc -3' miRNA: 3'- -AUUUGCACCGgUCAUAGa-CuuACuuC- -5' |
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29096 | 5' | -46.2 | NC_006146.1 | + | 153382 | 0.67 | 0.999913 |
Target: 5'- gGAugGUGGCCGG-AUUgu--UGAGGg -3' miRNA: 3'- aUUugCACCGGUCaUAGacuuACUUC- -5' |
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29096 | 5' | -46.2 | NC_006146.1 | + | 130232 | 0.67 | 0.99975 |
Target: 5'- gGGugGUGGCCAGgccgUUGu-UGGAGa -3' miRNA: 3'- aUUugCACCGGUCaua-GACuuACUUC- -5' |
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29096 | 5' | -46.2 | NC_006146.1 | + | 125119 | 1.08 | 0.029929 |
Target: 5'- gUAAACGUGGCCAGUAUCUGAAUGAAGu -3' miRNA: 3'- -AUUUGCACCGGUCAUAGACUUACUUC- -5' |
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29096 | 5' | -46.2 | NC_006146.1 | + | 114915 | 0.66 | 0.999964 |
Target: 5'- aUGGAUGggGGCguGUGUCUGuuUGAc- -3' miRNA: 3'- -AUUUGCa-CCGguCAUAGACuuACUuc -5' |
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29096 | 5' | -46.2 | NC_006146.1 | + | 112128 | 0.7 | 0.997427 |
Target: 5'- cUGGugGUGGCCucGGUG-CUGAcauUGGAGg -3' miRNA: 3'- -AUUugCACCGG--UCAUaGACUu--ACUUC- -5' |
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29096 | 5' | -46.2 | NC_006146.1 | + | 111642 | 0.69 | 0.998533 |
Target: 5'- aAGACGUcGGCCAGgccCUGAacacccaggcccAUGGAGg -3' miRNA: 3'- aUUUGCA-CCGGUCauaGACU------------UACUUC- -5' |
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29096 | 5' | -46.2 | NC_006146.1 | + | 109377 | 0.71 | 0.992041 |
Target: 5'- ---cCGUaGGCCAGguuUCUGAAUGAc- -3' miRNA: 3'- auuuGCA-CCGGUCau-AGACUUACUuc -5' |
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29096 | 5' | -46.2 | NC_006146.1 | + | 109340 | 0.66 | 0.999981 |
Target: 5'- -cAGCGUGGCCc---UCgGggUGggGa -3' miRNA: 3'- auUUGCACCGGucauAGaCuuACuuC- -5' |
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29096 | 5' | -46.2 | NC_006146.1 | + | 104690 | 0.66 | 0.999935 |
Target: 5'- cGGACGUGGCCuuuccaAUCUGAAUc--- -3' miRNA: 3'- aUUUGCACCGGuca---UAGACUUAcuuc -5' |
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29096 | 5' | -46.2 | NC_006146.1 | + | 103602 | 0.69 | 0.998533 |
Target: 5'- cGGACGUGGCCcGGgagCUGGcgGAGc -3' miRNA: 3'- aUUUGCACCGG-UCauaGACUuaCUUc -5' |
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29096 | 5' | -46.2 | NC_006146.1 | + | 92562 | 0.71 | 0.994097 |
Target: 5'- aAAugGUGGCCAagugugccuGUAUCUGAAUu--- -3' miRNA: 3'- aUUugCACCGGU---------CAUAGACUUAcuuc -5' |
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29096 | 5' | -46.2 | NC_006146.1 | + | 75108 | 0.66 | 0.999974 |
Target: 5'- gGAACcggGGCCAGUAcaggaUCUGGAgccGggGc -3' miRNA: 3'- aUUUGca-CCGGUCAU-----AGACUUa--CuuC- -5' |
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29096 | 5' | -46.2 | NC_006146.1 | + | 75060 | 0.66 | 0.999974 |
Target: 5'- gGAGCcggGGCCAGUAcaggaUCUGGAgccGggGc -3' miRNA: 3'- aUUUGca-CCGGUCAU-----AGACUUa--CuuC- -5' |
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29096 | 5' | -46.2 | NC_006146.1 | + | 57341 | 0.66 | 0.999981 |
Target: 5'- gGGGCGgGGCCccgGGUGUCg--GUGAGGg -3' miRNA: 3'- aUUUGCaCCGG---UCAUAGacuUACUUC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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