miRNA display CGI


Results 1 - 11 of 11 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29097 3' -52.9 NC_006146.1 + 72571 0.66 0.976554
Target:  5'- ----cGGCGUgGUgCUgGGGCUUGCc -3'
miRNA:   3'- uuuaaCCGCAgCAgGAgUCUGAGCGu -5'
29097 3' -52.9 NC_006146.1 + 65854 0.66 0.973946
Target:  5'- ---gUGGUGcCGUCCcagCGGACUCaGCc -3'
miRNA:   3'- uuuaACCGCaGCAGGa--GUCUGAG-CGu -5'
29097 3' -52.9 NC_006146.1 + 61399 0.66 0.971134
Target:  5'- ----gGGgGUUGUCC-CAGGCUgGCu -3'
miRNA:   3'- uuuaaCCgCAGCAGGaGUCUGAgCGu -5'
29097 3' -52.9 NC_006146.1 + 101887 0.66 0.96811
Target:  5'- ---gUGGCGggaaUCUCAGACUCGUg -3'
miRNA:   3'- uuuaACCGCagcaGGAGUCUGAGCGu -5'
29097 3' -52.9 NC_006146.1 + 59824 0.68 0.944734
Target:  5'- ----gGGCGUCGUCucgcacggugcggCUCAGGCUCcCGu -3'
miRNA:   3'- uuuaaCCGCAGCAG-------------GAGUCUGAGcGU- -5'
29097 3' -52.9 NC_006146.1 + 108736 0.68 0.940529
Target:  5'- ---cUGGUGUCcgccUCCUCGGAgUCGUg -3'
miRNA:   3'- uuuaACCGCAGc---AGGAGUCUgAGCGu -5'
29097 3' -52.9 NC_006146.1 + 157114 0.68 0.919392
Target:  5'- ----cGGCGUCGUCCagagUCAG-CgaggCGCAc -3'
miRNA:   3'- uuuaaCCGCAGCAGG----AGUCuGa---GCGU- -5'
29097 3' -52.9 NC_006146.1 + 150919 0.69 0.900916
Target:  5'- ----cGGCGUCGUggggCCUCcuGAcCUCGCAg -3'
miRNA:   3'- uuuaaCCGCAGCA----GGAGu-CU-GAGCGU- -5'
29097 3' -52.9 NC_006146.1 + 84508 0.69 0.894265
Target:  5'- ---gUGGUGUUuUCCUCGGACgUCGUg -3'
miRNA:   3'- uuuaACCGCAGcAGGAGUCUG-AGCGu -5'
29097 3' -52.9 NC_006146.1 + 24159 0.73 0.698855
Target:  5'- ---cUGGCGUCGUCCgccUAGACgUGCAc -3'
miRNA:   3'- uuuaACCGCAGCAGGa--GUCUGaGCGU- -5'
29097 3' -52.9 NC_006146.1 + 125813 1.07 0.007701
Target:  5'- gAAAUUGGCGUCGUCCUCAGACUCGCAg -3'
miRNA:   3'- -UUUAACCGCAGCAGGAGUCUGAGCGU- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.