miRNA display CGI


Results 1 - 20 of 185 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29097 5' -57.9 NC_006146.1 + 89967 0.66 0.858466
Target:  5'- uGUCAgauGGGCCUggcuGGgCCGgGAGGCu -3'
miRNA:   3'- -CAGUag-UUCGGGuu--CCgGGCgCUCCG- -5'
29097 5' -57.9 NC_006146.1 + 13162 0.66 0.850775
Target:  5'- ----cCAGGCCCAAgacccGGCCUGCccGGCc -3'
miRNA:   3'- caguaGUUCGGGUU-----CCGGGCGcuCCG- -5'
29097 5' -57.9 NC_006146.1 + 19318 0.66 0.850775
Target:  5'- ----cCAGGCCCAAgacccGGCCUGCccGGCc -3'
miRNA:   3'- caguaGUUCGGGUU-----CCGGGCGcuCCG- -5'
29097 5' -57.9 NC_006146.1 + 149973 0.66 0.850775
Target:  5'- --aGUgGGGgCCAGGGCCUGC-AGGUc -3'
miRNA:   3'- cagUAgUUCgGGUUCCGGGCGcUCCG- -5'
29097 5' -57.9 NC_006146.1 + 28552 0.66 0.850775
Target:  5'- ----cCAGGCCCAAgacccGGCCUGCccGGCc -3'
miRNA:   3'- caguaGUUCGGGUU-----CCGGGCGcuCCG- -5'
29097 5' -57.9 NC_006146.1 + 156904 0.66 0.850775
Target:  5'- -cCAgCAccAGCCCGgccgAGGCCUGgGuGGCg -3'
miRNA:   3'- caGUaGU--UCGGGU----UCCGGGCgCuCCG- -5'
29097 5' -57.9 NC_006146.1 + 158529 0.66 0.850775
Target:  5'- -aCAUCuugauaAAGuCCCGGGGUCCcUGGGGCu -3'
miRNA:   3'- caGUAG------UUC-GGGUUCCGGGcGCUCCG- -5'
29097 5' -57.9 NC_006146.1 + 25474 0.66 0.850775
Target:  5'- ----cCAGGCCCAAgacccGGCCUGCccGGCc -3'
miRNA:   3'- caguaGUUCGGGUU-----CCGGGCGcuCCG- -5'
29097 5' -57.9 NC_006146.1 + 39436 0.66 0.850775
Target:  5'- -----gGGGCCU--GGCCCGUGAGGa -3'
miRNA:   3'- caguagUUCGGGuuCCGGGCGCUCCg -5'
29097 5' -57.9 NC_006146.1 + 22396 0.66 0.850775
Target:  5'- ----cCAGGCCCAAgacccGGCCUGCccGGCc -3'
miRNA:   3'- caguaGUUCGGGUU-----CCGGGCGcuCCG- -5'
29097 5' -57.9 NC_006146.1 + 52093 0.66 0.850775
Target:  5'- -gCAUCAAGUUCGAGGUgCUGCucGGGGUc -3'
miRNA:   3'- caGUAGUUCGGGUUCCG-GGCG--CUCCG- -5'
29097 5' -57.9 NC_006146.1 + 16240 0.66 0.850775
Target:  5'- ----cCAGGCCCAAgacccGGCCUGCccGGCc -3'
miRNA:   3'- caguaGUUCGGGUU-----CCGGGCGcuCCG- -5'
29097 5' -57.9 NC_006146.1 + 159044 0.66 0.849995
Target:  5'- cGUCGggcccgcccCAAGCCCGagaagcaGGGCCCGgcgcaaGGGGUc -3'
miRNA:   3'- -CAGUa--------GUUCGGGU-------UCCGGGCg-----CUCCG- -5'
29097 5' -57.9 NC_006146.1 + 89422 0.66 0.842891
Target:  5'- ---uUgAGGCCUgguugGAGGCCCaaGAGGCu -3'
miRNA:   3'- caguAgUUCGGG-----UUCCGGGcgCUCCG- -5'
29097 5' -57.9 NC_006146.1 + 128058 0.66 0.842891
Target:  5'- -gCGU-GGGCCUGGcGGCCCuCGAGGCc -3'
miRNA:   3'- caGUAgUUCGGGUU-CCGGGcGCUCCG- -5'
29097 5' -57.9 NC_006146.1 + 92427 0.66 0.842891
Target:  5'- uUC-UgAAGCCCAAgacaucaaagguGGCCCGCcuGGGGUc -3'
miRNA:   3'- cAGuAgUUCGGGUU------------CCGGGCG--CUCCG- -5'
29097 5' -57.9 NC_006146.1 + 168916 0.66 0.842891
Target:  5'- uGUCAgCAGGUUCucggagacgagGGGGCCCGUGgacAGGCc -3'
miRNA:   3'- -CAGUaGUUCGGG-----------UUCCGGGCGC---UCCG- -5'
29097 5' -57.9 NC_006146.1 + 90312 0.66 0.842891
Target:  5'- cGUCugaauUCAGGCCCcggcacgugugaAAGGCCUGCucauuAGGUc -3'
miRNA:   3'- -CAGu----AGUUCGGG------------UUCCGGGCGc----UCCG- -5'
29097 5' -57.9 NC_006146.1 + 114706 0.66 0.842891
Target:  5'- cGUCcgCGAGaCCC-GGGCCCugGCGGccgaguaucGGCg -3'
miRNA:   3'- -CAGuaGUUC-GGGuUCCGGG--CGCU---------CCG- -5'
29097 5' -57.9 NC_006146.1 + 72264 0.66 0.83482
Target:  5'- uGUCAUUu-GCCC-AGGCCCagaAGGCa -3'
miRNA:   3'- -CAGUAGuuCGGGuUCCGGGcgcUCCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.