miRNA display CGI


Results 21 - 40 of 257 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29098 3' -66.2 NC_006146.1 + 136763 0.66 0.497172
Target:  5'- gGGGC-CGGGggccGGGUGCCccugGGUCCgCUGCc -3'
miRNA:   3'- -CCCGuGCUC----CCCGCGG----CCGGGgGAUG- -5'
29098 3' -66.2 NC_006146.1 + 135463 0.66 0.497172
Target:  5'- gGGGC-CGGGggccGGGUGCCccugGGUCCgCUGCc -3'
miRNA:   3'- -CCCGuGCUC----CCCGCGG----CCGGGgGAUG- -5'
29098 3' -66.2 NC_006146.1 + 136020 0.66 0.497172
Target:  5'- gGGGC-CGGGggccGGGUGCCccugGGUCCgCUGCc -3'
miRNA:   3'- -CCCGuGCUC----CCCGCGG----CCGGGgGAUG- -5'
29098 3' -66.2 NC_006146.1 + 135927 0.66 0.497172
Target:  5'- gGGGC-CGGGggccGGGUGCCccugGGUCCgCUGCc -3'
miRNA:   3'- -CCCGuGCUC----CCCGCGG----CCGGGgGAUG- -5'
29098 3' -66.2 NC_006146.1 + 135556 0.66 0.497172
Target:  5'- gGGGC-CGGGggccGGGUGCCccugGGUCCgCUGCc -3'
miRNA:   3'- -CCCGuGCUC----CCCGCGG----CCGGGgGAUG- -5'
29098 3' -66.2 NC_006146.1 + 137507 0.66 0.497172
Target:  5'- gGGGC-CGGGggccGGGUGCCccugGGUCCgCUGCc -3'
miRNA:   3'- -CCCGuGCUC----CCCGCGG----CCGGGgGAUG- -5'
29098 3' -66.2 NC_006146.1 + 136113 0.66 0.497172
Target:  5'- gGGGC-CGGGggccGGGUGCCccugGGUCCgCUGCc -3'
miRNA:   3'- -CCCGuGCUC----CCCGCGG----CCGGGgGAUG- -5'
29098 3' -66.2 NC_006146.1 + 135834 0.66 0.497172
Target:  5'- gGGGC-CGGGggccGGGUGCCccugGGUCCgCUGCc -3'
miRNA:   3'- -CCCGuGCUC----CCCGCGG----CCGGGgGAUG- -5'
29098 3' -66.2 NC_006146.1 + 48640 0.66 0.497172
Target:  5'- cGGGCucCGGGcGGGUGCCcagcGCCUUCUGa -3'
miRNA:   3'- -CCCGu-GCUC-CCCGCGGc---CGGGGGAUg -5'
29098 3' -66.2 NC_006146.1 + 43634 0.66 0.497172
Target:  5'- uGGGCG-GcGGGGCG-UGGCCgCCUGg -3'
miRNA:   3'- -CCCGUgCuCCCCGCgGCCGGgGGAUg -5'
29098 3' -66.2 NC_006146.1 + 43208 0.66 0.497172
Target:  5'- aGGCGgGGauGGGGCGCUGcuggugagaggaGCCCCCc-- -3'
miRNA:   3'- cCCGUgCU--CCCCGCGGC------------CGGGGGaug -5'
29098 3' -66.2 NC_006146.1 + 137228 0.66 0.497172
Target:  5'- gGGGC-CGGGggccGGGUGCCccugGGUCCgCUGCc -3'
miRNA:   3'- -CCCGuGCUC----CCCGCGG----CCGGGgGAUG- -5'
29098 3' -66.2 NC_006146.1 + 137321 0.66 0.497172
Target:  5'- gGGGC-CGGGggccGGGUGCCccugGGUCCgCUGCc -3'
miRNA:   3'- -CCCGuGCUC----CCCGCGG----CCGGGgGAUG- -5'
29098 3' -66.2 NC_006146.1 + 137414 0.66 0.497172
Target:  5'- gGGGC-CGGGggccGGGUGCCccugGGUCCgCUGCc -3'
miRNA:   3'- -CCCGuGCUC----CCCGCGG----CCGGGgGAUG- -5'
29098 3' -66.2 NC_006146.1 + 136671 0.66 0.497172
Target:  5'- gGGGC-CGGGggccGGGUGCCccugGGUCCgCUGCc -3'
miRNA:   3'- -CCCGuGCUC----CCCGCGG----CCGGGgGAUG- -5'
29098 3' -66.2 NC_006146.1 + 136949 0.66 0.497172
Target:  5'- gGGGC-CGGGggccGGGUGCCccugGGUCCgCUGCc -3'
miRNA:   3'- -CCCGuGCUC----CCCGCGG----CCGGGgGAUG- -5'
29098 3' -66.2 NC_006146.1 + 136299 0.66 0.497172
Target:  5'- gGGGC-CGGGggccGGGUGCCccugGGUCCgCUGCc -3'
miRNA:   3'- -CCCGuGCUC----CCCGCGG----CCGGGgGAUG- -5'
29098 3' -66.2 NC_006146.1 + 135649 0.66 0.497172
Target:  5'- gGGGC-CGGGggccGGGUGCCccugGGUCCgCUGCc -3'
miRNA:   3'- -CCCGuGCUC----CCCGCGG----CCGGGgGAUG- -5'
29098 3' -66.2 NC_006146.1 + 135370 0.66 0.497172
Target:  5'- gGGGC-CGGGggccGGGUGCCccugGGUCCgCUGCc -3'
miRNA:   3'- -CCCGuGCUC----CCCGCGG----CCGGGgGAUG- -5'
29098 3' -66.2 NC_006146.1 + 135184 0.66 0.497172
Target:  5'- gGGGC-CGGGggccGGGUGCCccugGGUCCgCUGCc -3'
miRNA:   3'- -CCCGuGCUC----CCCGCGG----CCGGGgGAUG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.