miRNA display CGI


Results 41 - 60 of 157 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29099 3' -64 NC_006146.1 + 93147 0.67 0.508411
Target:  5'- cGCUA-GGGCCUCUGCGgCaCUaUCCGg -3'
miRNA:   3'- -UGGUcCCCGGAGACGCgG-GAgAGGCg -5'
29099 3' -64 NC_006146.1 + 54582 0.67 0.49019
Target:  5'- gAUCAGGGaCCUCUGUGCCUcCUUCc- -3'
miRNA:   3'- -UGGUCCCcGGAGACGCGGGaGAGGcg -5'
29099 3' -64 NC_006146.1 + 44176 0.67 0.49019
Target:  5'- aACUGGGcGgugcccuccaGCCUCUGCGCCCUgcgaguaacgCUuuGCg -3'
miRNA:   3'- -UGGUCC-C----------CGGAGACGCGGGA----------GAggCG- -5'
29099 3' -64 NC_006146.1 + 122041 0.67 0.508411
Target:  5'- cGCCuGGaGGCCgacggCUucGCGCCCgcCUCCGa -3'
miRNA:   3'- -UGGuCC-CCGGa----GA--CGCGGGa-GAGGCg -5'
29099 3' -64 NC_006146.1 + 10838 0.67 0.526913
Target:  5'- -aCAGGuGCCUgaCUGUGCCgCUCcUCUGCg -3'
miRNA:   3'- ugGUCCcCGGA--GACGCGG-GAG-AGGCG- -5'
29099 3' -64 NC_006146.1 + 24292 0.67 0.526913
Target:  5'- gGCCGGGGGCUggacgCUGUuuCCC-CUCCa- -3'
miRNA:   3'- -UGGUCCCCGGa----GACGc-GGGaGAGGcg -5'
29099 3' -64 NC_006146.1 + 11228 0.67 0.536258
Target:  5'- aACCGuGGGGCCaUCUGCGagCUUUagggucCCGCu -3'
miRNA:   3'- -UGGU-CCCCGG-AGACGCggGAGA------GGCG- -5'
29099 3' -64 NC_006146.1 + 94318 0.67 0.536258
Target:  5'- aAUCcGGuGCCUCUGCgGCCCcaUC-CCGCa -3'
miRNA:   3'- -UGGuCCcCGGAGACG-CGGG--AGaGGCG- -5'
29099 3' -64 NC_006146.1 + 114313 0.67 0.536258
Target:  5'- gACCGGcGGCgggCUCgGCGCCCgg-CCGCc -3'
miRNA:   3'- -UGGUCcCCG---GAGaCGCGGGagaGGCG- -5'
29099 3' -64 NC_006146.1 + 124171 0.67 0.499263
Target:  5'- gGCCAGcGuGGCCUCcGCcCgCCUCggagCCGCc -3'
miRNA:   3'- -UGGUC-C-CCGGAGaCGcG-GGAGa---GGCG- -5'
29099 3' -64 NC_006146.1 + 157313 0.68 0.454703
Target:  5'- gACUGGaGGGCC-CUGgGaggcCCCUgUCCGCg -3'
miRNA:   3'- -UGGUC-CCCGGaGACgC----GGGAgAGGCG- -5'
29099 3' -64 NC_006146.1 + 92780 0.68 0.460815
Target:  5'- --aAGGGGCCUCUGC-CUCUCaggcuucccugucuUCCGg -3'
miRNA:   3'- uggUCCCCGGAGACGcGGGAG--------------AGGCg -5'
29099 3' -64 NC_006146.1 + 44820 0.68 0.454703
Target:  5'- gACCucuguaGGGGGCCg--GCGCCC-CUCgUGCc -3'
miRNA:   3'- -UGG------UCCCCGGagaCGCGGGaGAG-GCG- -5'
29099 3' -64 NC_006146.1 + 23070 0.68 0.454703
Target:  5'- cGCCuucaccGGCCucaUCUGCGCCUUCUCCu- -3'
miRNA:   3'- -UGGucc---CCGG---AGACGCGGGAGAGGcg -5'
29099 3' -64 NC_006146.1 + 77969 0.68 0.463447
Target:  5'- aGCCGGuGGCCUUggaggUGCcgGUCCUCUCUGUc -3'
miRNA:   3'- -UGGUCcCCGGAG-----ACG--CGGGAGAGGCG- -5'
29099 3' -64 NC_006146.1 + 81129 0.68 0.463447
Target:  5'- gGCCAuGGGCCcCU-CGUCCUCgauuUCCGCc -3'
miRNA:   3'- -UGGUcCCCGGaGAcGCGGGAG----AGGCG- -5'
29099 3' -64 NC_006146.1 + 107788 0.68 0.472278
Target:  5'- cCCAGGGGCaC-CUGCGCagggUCUCCu- -3'
miRNA:   3'- uGGUCCCCG-GaGACGCGgg--AGAGGcg -5'
29099 3' -64 NC_006146.1 + 71254 0.68 0.428181
Target:  5'- gGCCuggcgggGGGcGGCCUCUaCGCCUUcCUCCGg -3'
miRNA:   3'- -UGG-------UCC-CCGGAGAcGCGGGA-GAGGCg -5'
29099 3' -64 NC_006146.1 + 48359 0.68 0.437488
Target:  5'- gGCCAGcGGGCCggccucgaguUCcGCGaaccaCCCgggCUCCGCg -3'
miRNA:   3'- -UGGUC-CCCGG----------AGaCGC-----GGGa--GAGGCG- -5'
29099 3' -64 NC_006146.1 + 4960 0.68 0.446049
Target:  5'- gACCAGGGGCCacgagagccUCcugGCGgCCUCacuaaCGCg -3'
miRNA:   3'- -UGGUCCCCGG---------AGa--CGCgGGAGag---GCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.