Results 61 - 80 of 157 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
29099 | 3' | -64 | NC_006146.1 | + | 13266 | 0.7 | 0.342685 |
Target: 5'- aACCAGGGGaCCg--GCGCCCcagagccccUCgggUCCGCc -3' miRNA: 3'- -UGGUCCCC-GGagaCGCGGG---------AG---AGGCG- -5' |
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29099 | 3' | -64 | NC_006146.1 | + | 117909 | 0.7 | 0.328395 |
Target: 5'- gGCCagaagAGGGGCCUCgagaCGCCCgCcCCGCc -3' miRNA: 3'- -UGG-----UCCCCGGAGac--GCGGGaGaGGCG- -5' |
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29099 | 3' | -64 | NC_006146.1 | + | 142138 | 0.7 | 0.335484 |
Target: 5'- gACUAGGGGCC-CUGgGCCCcgagggcggCUCCc- -3' miRNA: 3'- -UGGUCCCCGGaGACgCGGGa--------GAGGcg -5' |
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29099 | 3' | -64 | NC_006146.1 | + | 52336 | 0.7 | 0.357417 |
Target: 5'- gGCCGGGGuGCCcggggCgGCGUCCUUUUgGCa -3' miRNA: 3'- -UGGUCCC-CGGa----GaCGCGGGAGAGgCG- -5' |
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29099 | 3' | -64 | NC_006146.1 | + | 3382 | 0.7 | 0.373357 |
Target: 5'- gGCCGGGGGCgCggcccggcgccagccCUGCcCCCUCUCCc- -3' miRNA: 3'- -UGGUCCCCG-Ga--------------GACGcGGGAGAGGcg -5' |
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29099 | 3' | -64 | NC_006146.1 | + | 2450 | 0.7 | 0.373357 |
Target: 5'- gGCCGGGGGCgCggcccggcgccagccCUGCcCCCUCUCCc- -3' miRNA: 3'- -UGGUCCCCG-Ga--------------GACGcGGGAGAGGcg -5' |
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29099 | 3' | -64 | NC_006146.1 | + | 1518 | 0.7 | 0.373357 |
Target: 5'- gGCCGGGGGCgCggcccggcgccagccCUGCcCCCUCUCCc- -3' miRNA: 3'- -UGGUCCCCG-Ga--------------GACGcGGGAGAGGcg -5' |
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29099 | 3' | -64 | NC_006146.1 | + | 587 | 0.7 | 0.373357 |
Target: 5'- gGCCGGGGGCgCggcccggcgccagccCUGCcCCCUCUCCc- -3' miRNA: 3'- -UGGUCCCCG-Ga--------------GACGcGGGAGAGGcg -5' |
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29099 | 3' | -64 | NC_006146.1 | + | 50908 | 0.7 | 0.349996 |
Target: 5'- gGCCu-GGGCCUCcGUGCCCaagaugugUCUCCGa -3' miRNA: 3'- -UGGucCCCGGAGaCGCGGG--------AGAGGCg -5' |
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29099 | 3' | -64 | NC_006146.1 | + | 3314 | 0.7 | 0.342685 |
Target: 5'- cCCAGGGgaggcccgGCCUCcacacaCGgCCUCUCCGCg -3' miRNA: 3'- uGGUCCC--------CGGAGac----GCgGGAGAGGCG- -5' |
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29099 | 3' | -64 | NC_006146.1 | + | 2382 | 0.7 | 0.342685 |
Target: 5'- cCCAGGGgaggcccgGCCUCcacacaCGgCCUCUCCGCg -3' miRNA: 3'- uGGUCCC--------CGGAGac----GCgGGAGAGGCG- -5' |
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29099 | 3' | -64 | NC_006146.1 | + | 1450 | 0.7 | 0.342685 |
Target: 5'- cCCAGGGgaggcccgGCCUCcacacaCGgCCUCUCCGCg -3' miRNA: 3'- uGGUCCC--------CGGAGac----GCgGGAGAGGCG- -5' |
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29099 | 3' | -64 | NC_006146.1 | + | 145216 | 0.7 | 0.335484 |
Target: 5'- gACUAGGGGCC-CUGgGCCCcgagggcggCUCCc- -3' miRNA: 3'- -UGGUCCCCGGaGACgCGGGa--------GAGGcg -5' |
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29099 | 3' | -64 | NC_006146.1 | + | 148294 | 0.7 | 0.335484 |
Target: 5'- gACUAGGGGCC-CUGgGCCCcgagggcggCUCCc- -3' miRNA: 3'- -UGGUCCCCGGaGACgCGGGa--------GAGGcg -5' |
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29099 | 3' | -64 | NC_006146.1 | + | 151372 | 0.7 | 0.335484 |
Target: 5'- gACUAGGGGCC-CUGgGCCCcgagggcggCUCCc- -3' miRNA: 3'- -UGGUCCCCGGaGACgCGGGa--------GAGGcg -5' |
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29099 | 3' | -64 | NC_006146.1 | + | 154450 | 0.7 | 0.335484 |
Target: 5'- gACUAGGGGCC-CUGgGCCCcgagggcggCUCCc- -3' miRNA: 3'- -UGGUCCCCGGaGACgCGGGa--------GAGGcg -5' |
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29099 | 3' | -64 | NC_006146.1 | + | 157528 | 0.7 | 0.335484 |
Target: 5'- gACUAGGGGCC-CUGgGCCCcgagggcggCUCCc- -3' miRNA: 3'- -UGGUCCCCGGaGACgCGGGa--------GAGGcg -5' |
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29099 | 3' | -64 | NC_006146.1 | + | 13054 | 0.7 | 0.335484 |
Target: 5'- uCCAGGcGGCgCUCgGUGCCCgucccCUCCGg -3' miRNA: 3'- uGGUCC-CCG-GAGaCGCGGGa----GAGGCg -5' |
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29099 | 3' | -64 | NC_006146.1 | + | 519 | 0.7 | 0.342685 |
Target: 5'- cCCAGGGgaggcccgGCCUCcacacaCGgCCUCUCCGCg -3' miRNA: 3'- uGGUCCC--------CGGAGac----GCgGGAGAGGCG- -5' |
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29099 | 3' | -64 | NC_006146.1 | + | 71870 | 0.7 | 0.334771 |
Target: 5'- gGCCcugGGGGGCCUCUacacggccgucacGCGgaCCCUC-CUGCg -3' miRNA: 3'- -UGG---UCCCCGGAGA-------------CGC--GGGAGaGGCG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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