miRNA display CGI


Results 41 - 60 of 157 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29099 3' -64 NC_006146.1 + 148968 0.72 0.28189
Target:  5'- gGCCGcGGGCCUCUaCuUCCUCUCUGCu -3'
miRNA:   3'- -UGGUcCCCGGAGAcGcGGGAGAGGCG- -5'
29099 3' -64 NC_006146.1 + 158203 0.72 0.28189
Target:  5'- gGCCGcGGGCCUCUaCuUCCUCUCUGCu -3'
miRNA:   3'- -UGGUcCCCGGAGAcGcGGGAGAGGCG- -5'
29099 3' -64 NC_006146.1 + 155124 0.72 0.28189
Target:  5'- gGCCGcGGGCCUCUaCuUCCUCUCUGCu -3'
miRNA:   3'- -UGGUcCCCGGAGAcGcGGGAGAGGCG- -5'
29099 3' -64 NC_006146.1 + 152046 0.72 0.28189
Target:  5'- gGCCGcGGGCCUCUaCuUCCUCUCUGCu -3'
miRNA:   3'- -UGGUcCCCGGAGAcGcGGGAGAGGCG- -5'
29099 3' -64 NC_006146.1 + 145890 0.72 0.28189
Target:  5'- gGCCGcGGGCCUCUaCuUCCUCUCUGCu -3'
miRNA:   3'- -UGGUcCCCGGAGAcGcGGGAGAGGCG- -5'
29099 3' -64 NC_006146.1 + 142812 0.72 0.28189
Target:  5'- gGCCGcGGGCCUCUaCuUCCUCUCUGCu -3'
miRNA:   3'- -UGGUcCCCGGAGAcGcGGGAGAGGCG- -5'
29099 3' -64 NC_006146.1 + 28977 0.71 0.294621
Target:  5'- -aCAGGGGCCUCccaGgGCCCUCcagUCCa- -3'
miRNA:   3'- ugGUCCCCGGAGa--CgCGGGAG---AGGcg -5'
29099 3' -64 NC_006146.1 + 25900 0.71 0.294621
Target:  5'- -aCAGGGGCCUCccaGgGCCCUCcagUCCa- -3'
miRNA:   3'- ugGUCCCCGGAGa--CgCGGGAG---AGGcg -5'
29099 3' -64 NC_006146.1 + 22822 0.71 0.294621
Target:  5'- -aCAGGGGCCUCccaGgGCCCUCcagUCCa- -3'
miRNA:   3'- ugGUCCCCGGAGa--CgCGGGAG---AGGcg -5'
29099 3' -64 NC_006146.1 + 19744 0.71 0.294621
Target:  5'- -aCAGGGGCCUCccaGgGCCCUCcagUCCa- -3'
miRNA:   3'- ugGUCCCCGGAGa--CgCGGGAG---AGGcg -5'
29099 3' -64 NC_006146.1 + 16666 0.71 0.294621
Target:  5'- -aCAGGGGCCUCccaGgGCCCUCcagUCCa- -3'
miRNA:   3'- ugGUCCCCGGAGa--CgCGGGAG---AGGcg -5'
29099 3' -64 NC_006146.1 + 13588 0.71 0.294621
Target:  5'- -aCAGGGGCCUCccaGgGCCCUCcagUCCa- -3'
miRNA:   3'- ugGUCCCCGGAGa--CgCGGGAG---AGGcg -5'
29099 3' -64 NC_006146.1 + 111854 0.71 0.314551
Target:  5'- uGCguGucGGCCcgCUGCGCCCUCaCCGCc -3'
miRNA:   3'- -UGguCc-CCGGa-GACGCGGGAGaGGCG- -5'
29099 3' -64 NC_006146.1 + 129273 0.7 0.328395
Target:  5'- gAUguGGGGCUggUCUGCGCCCgggC-CCaGCg -3'
miRNA:   3'- -UGguCCCCGG--AGACGCGGGa--GaGG-CG- -5'
29099 3' -64 NC_006146.1 + 117909 0.7 0.328395
Target:  5'- gGCCagaagAGGGGCCUCgagaCGCCCgCcCCGCc -3'
miRNA:   3'- -UGG-----UCCCCGGAGac--GCGGGaGaGGCG- -5'
29099 3' -64 NC_006146.1 + 142972 0.7 0.328395
Target:  5'- uGCCAGGGGgCUUCcGCccuaGCCCUUggCCGUg -3'
miRNA:   3'- -UGGUCCCC-GGAGaCG----CGGGAGa-GGCG- -5'
29099 3' -64 NC_006146.1 + 71870 0.7 0.334771
Target:  5'- gGCCcugGGGGGCCUCUacacggccgucacGCGgaCCCUC-CUGCg -3'
miRNA:   3'- -UGG---UCCCCGGAGA-------------CGC--GGGAGaGGCG- -5'
29099 3' -64 NC_006146.1 + 148294 0.7 0.335484
Target:  5'- gACUAGGGGCC-CUGgGCCCcgagggcggCUCCc- -3'
miRNA:   3'- -UGGUCCCCGGaGACgCGGGa--------GAGGcg -5'
29099 3' -64 NC_006146.1 + 145216 0.7 0.335484
Target:  5'- gACUAGGGGCC-CUGgGCCCcgagggcggCUCCc- -3'
miRNA:   3'- -UGGUCCCCGGaGACgCGGGa--------GAGGcg -5'
29099 3' -64 NC_006146.1 + 142138 0.7 0.335484
Target:  5'- gACUAGGGGCC-CUGgGCCCcgagggcggCUCCc- -3'
miRNA:   3'- -UGGUCCCCGGaGACgCGGGa--------GAGGcg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.