miRNA display CGI


Results 61 - 80 of 157 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29099 3' -64 NC_006146.1 + 151372 0.7 0.335484
Target:  5'- gACUAGGGGCC-CUGgGCCCcgagggcggCUCCc- -3'
miRNA:   3'- -UGGUCCCCGGaGACgCGGGa--------GAGGcg -5'
29099 3' -64 NC_006146.1 + 154450 0.7 0.335484
Target:  5'- gACUAGGGGCC-CUGgGCCCcgagggcggCUCCc- -3'
miRNA:   3'- -UGGUCCCCGGaGACgCGGGa--------GAGGcg -5'
29099 3' -64 NC_006146.1 + 13054 0.7 0.335484
Target:  5'- uCCAGGcGGCgCUCgGUGCCCgucccCUCCGg -3'
miRNA:   3'- uGGUCC-CCG-GAGaCGCGGGa----GAGGCg -5'
29099 3' -64 NC_006146.1 + 142138 0.7 0.335484
Target:  5'- gACUAGGGGCC-CUGgGCCCcgagggcggCUCCc- -3'
miRNA:   3'- -UGGUCCCCGGaGACgCGGGa--------GAGGcg -5'
29099 3' -64 NC_006146.1 + 25578 0.7 0.342685
Target:  5'- aACCAGGGGaCCg--GCGCCCcagagccccUCgggUCCGCc -3'
miRNA:   3'- -UGGUCCCC-GGagaCGCGGG---------AG---AGGCG- -5'
29099 3' -64 NC_006146.1 + 13266 0.7 0.342685
Target:  5'- aACCAGGGGaCCg--GCGCCCcagagccccUCgggUCCGCc -3'
miRNA:   3'- -UGGUCCCC-GGagaCGCGGG---------AG---AGGCG- -5'
29099 3' -64 NC_006146.1 + 16344 0.7 0.342685
Target:  5'- aACCAGGGGaCCg--GCGCCCcagagccccUCgggUCCGCc -3'
miRNA:   3'- -UGGUCCCC-GGagaCGCGGG---------AG---AGGCG- -5'
29099 3' -64 NC_006146.1 + 22500 0.7 0.342685
Target:  5'- aACCAGGGGaCCg--GCGCCCcagagccccUCgggUCCGCc -3'
miRNA:   3'- -UGGUCCCC-GGagaCGCGGG---------AG---AGGCG- -5'
29099 3' -64 NC_006146.1 + 28656 0.7 0.342685
Target:  5'- aACCAGGGGaCCg--GCGCCCcagagccccUCgggUCCGCc -3'
miRNA:   3'- -UGGUCCCC-GGagaCGCGGG---------AG---AGGCG- -5'
29099 3' -64 NC_006146.1 + 19422 0.7 0.342685
Target:  5'- aACCAGGGGaCCg--GCGCCCcagagccccUCgggUCCGCc -3'
miRNA:   3'- -UGGUCCCC-GGagaCGCGGG---------AG---AGGCG- -5'
29099 3' -64 NC_006146.1 + 3314 0.7 0.342685
Target:  5'- cCCAGGGgaggcccgGCCUCcacacaCGgCCUCUCCGCg -3'
miRNA:   3'- uGGUCCC--------CGGAGac----GCgGGAGAGGCG- -5'
29099 3' -64 NC_006146.1 + 519 0.7 0.342685
Target:  5'- cCCAGGGgaggcccgGCCUCcacacaCGgCCUCUCCGCg -3'
miRNA:   3'- uGGUCCC--------CGGAGac----GCgGGAGAGGCG- -5'
29099 3' -64 NC_006146.1 + 2382 0.7 0.342685
Target:  5'- cCCAGGGgaggcccgGCCUCcacacaCGgCCUCUCCGCg -3'
miRNA:   3'- uGGUCCC--------CGGAGac----GCgGGAGAGGCG- -5'
29099 3' -64 NC_006146.1 + 1450 0.7 0.342685
Target:  5'- cCCAGGGgaggcccgGCCUCcacacaCGgCCUCUCCGCg -3'
miRNA:   3'- uGGUCCC--------CGGAGac----GCgGGAGAGGCG- -5'
29099 3' -64 NC_006146.1 + 50908 0.7 0.349996
Target:  5'- gGCCu-GGGCCUCcGUGCCCaagaugugUCUCCGa -3'
miRNA:   3'- -UGGucCCCGGAGaCGCGGG--------AGAGGCg -5'
29099 3' -64 NC_006146.1 + 52336 0.7 0.357417
Target:  5'- gGCCGGGGuGCCcggggCgGCGUCCUUUUgGCa -3'
miRNA:   3'- -UGGUCCC-CGGa----GaCGCGGGAGAGgCG- -5'
29099 3' -64 NC_006146.1 + 88966 0.7 0.357417
Target:  5'- cGCC-GGGGCCUUUGaaCCCUUUCCa- -3'
miRNA:   3'- -UGGuCCCCGGAGACgcGGGAGAGGcg -5'
29099 3' -64 NC_006146.1 + 68932 0.7 0.364948
Target:  5'- gACC-GGGGCC--UGgGCCCaggagaUCUCCGCc -3'
miRNA:   3'- -UGGuCCCCGGagACgCGGG------AGAGGCG- -5'
29099 3' -64 NC_006146.1 + 98461 0.7 0.364948
Target:  5'- cCCGGGGGCCagucUCUGgGUCag-UCCGCg -3'
miRNA:   3'- uGGUCCCCGG----AGACgCGGgagAGGCG- -5'
29099 3' -64 NC_006146.1 + 587 0.7 0.373357
Target:  5'- gGCCGGGGGCgCggcccggcgccagccCUGCcCCCUCUCCc- -3'
miRNA:   3'- -UGGUCCCCG-Ga--------------GACGcGGGAGAGGcg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.