miRNA display CGI


Results 81 - 100 of 157 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29099 3' -64 NC_006146.1 + 1518 0.7 0.373357
Target:  5'- gGCCGGGGGCgCggcccggcgccagccCUGCcCCCUCUCCc- -3'
miRNA:   3'- -UGGUCCCCG-Ga--------------GACGcGGGAGAGGcg -5'
29099 3' -64 NC_006146.1 + 2450 0.7 0.373357
Target:  5'- gGCCGGGGGCgCggcccggcgccagccCUGCcCCCUCUCCc- -3'
miRNA:   3'- -UGGUCCCCG-Ga--------------GACGcGGGAGAGGcg -5'
29099 3' -64 NC_006146.1 + 587 0.7 0.373357
Target:  5'- gGCCGGGGGCgCggcccggcgccagccCUGCcCCCUCUCCc- -3'
miRNA:   3'- -UGGUCCCCG-Ga--------------GACGcGGGAGAGGcg -5'
29099 3' -64 NC_006146.1 + 108534 0.69 0.379556
Target:  5'- gGCCAGGGGCCUCUccgGCGCggcguuggaguggCUgggCUUgGCu -3'
miRNA:   3'- -UGGUCCCCGGAGA---CGCG-------------GGa--GAGgCG- -5'
29099 3' -64 NC_006146.1 + 127678 0.69 0.38819
Target:  5'- uCCAGGGGggcuCCUCUcaccagcaGCGCCCcaUCcCCGCc -3'
miRNA:   3'- uGGUCCCC----GGAGA--------CGCGGG--AGaGGCG- -5'
29099 3' -64 NC_006146.1 + 45533 0.69 0.412384
Target:  5'- gGCCu-GGGCCUCcuugggcuugGcCGCCCUggcCUCCGCg -3'
miRNA:   3'- -UGGucCCCGGAGa---------C-GCGGGA---GAGGCG- -5'
29099 3' -64 NC_006146.1 + 15410 0.69 0.412384
Target:  5'- cGCCAGGuGGCCUCagagggGCugGCCCgg-CUGCa -3'
miRNA:   3'- -UGGUCC-CCGGAGa-----CG--CGGGagaGGCG- -5'
29099 3' -64 NC_006146.1 + 71254 0.68 0.428181
Target:  5'- gGCCuggcgggGGGcGGCCUCUaCGCCUUcCUCCGg -3'
miRNA:   3'- -UGG-------UCC-CCGGAGAcGCGGGA-GAGGCg -5'
29099 3' -64 NC_006146.1 + 40537 0.68 0.437488
Target:  5'- cCCGGGGGagCUCUcaGCCC-CUCUGCa -3'
miRNA:   3'- uGGUCCCCg-GAGAcgCGGGaGAGGCG- -5'
29099 3' -64 NC_006146.1 + 19967 0.68 0.437488
Target:  5'- gGCCGGGGGCgUCUGCgaggucaggagGCCCcacgaCGCc -3'
miRNA:   3'- -UGGUCCCCGgAGACG-----------CGGGagag-GCG- -5'
29099 3' -64 NC_006146.1 + 48359 0.68 0.437488
Target:  5'- gGCCAGcGGGCCggccucgaguUCcGCGaaccaCCCgggCUCCGCg -3'
miRNA:   3'- -UGGUC-CCCGG----------AGaCGC-----GGGa--GAGGCG- -5'
29099 3' -64 NC_006146.1 + 41842 0.68 0.440901
Target:  5'- -gCGGGGGCUgUCUGCGCCggcgucugggcccagCUCgggCUGCg -3'
miRNA:   3'- ugGUCCCCGG-AGACGCGG---------------GAGa--GGCG- -5'
29099 3' -64 NC_006146.1 + 4960 0.68 0.446049
Target:  5'- gACCAGGGGCCacgagagccUCcugGCGgCCUCacuaaCGCg -3'
miRNA:   3'- -UGGUCCCCGG---------AGa--CGCgGGAGag---GCG- -5'
29099 3' -64 NC_006146.1 + 104447 0.68 0.446049
Target:  5'- -aCAGGGGCg---GCGCCCUCggcaggcagCUGCg -3'
miRNA:   3'- ugGUCCCCGgagaCGCGGGAGa--------GGCG- -5'
29099 3' -64 NC_006146.1 + 145001 0.68 0.454703
Target:  5'- gACUGGaGGGCC-CUGgGaggcCCCUgUCCGCg -3'
miRNA:   3'- -UGGUC-CCCGGaGACgC----GGGAgAGGCG- -5'
29099 3' -64 NC_006146.1 + 148079 0.68 0.454703
Target:  5'- gACUGGaGGGCC-CUGgGaggcCCCUgUCCGCg -3'
miRNA:   3'- -UGGUC-CCCGGaGACgC----GGGAgAGGCG- -5'
29099 3' -64 NC_006146.1 + 141923 0.68 0.454703
Target:  5'- gACUGGaGGGCC-CUGgGaggcCCCUgUCCGCg -3'
miRNA:   3'- -UGGUC-CCCGGaGACgC----GGGAgAGGCG- -5'
29099 3' -64 NC_006146.1 + 23070 0.68 0.454703
Target:  5'- cGCCuucaccGGCCucaUCUGCGCCUUCUCCu- -3'
miRNA:   3'- -UGGucc---CCGG---AGACGCGGGAGAGGcg -5'
29099 3' -64 NC_006146.1 + 128210 0.68 0.454703
Target:  5'- cGCUGGGGGgCUCUGCcagccucaggcaGCCCa--CCGCg -3'
miRNA:   3'- -UGGUCCCCgGAGACG------------CGGGagaGGCG- -5'
29099 3' -64 NC_006146.1 + 44820 0.68 0.454703
Target:  5'- gACCucuguaGGGGGCCg--GCGCCC-CUCgUGCc -3'
miRNA:   3'- -UGG------UCCCCGGagaCGCGGGaGAG-GCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.