Results 61 - 80 of 157 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value![]() |
Predicted miRNA align pattern | |||||||
29099 | 3' | -64 | NC_006146.1 | + | 151157 | 0.68 | 0.454703 |
Target: 5'- gACUGGaGGGCC-CUGgGaggcCCCUgUCCGCg -3' miRNA: 3'- -UGGUC-CCCGGaGACgC----GGGAgAGGCG- -5' |
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29099 | 3' | -64 | NC_006146.1 | + | 141923 | 0.68 | 0.454703 |
Target: 5'- gACUGGaGGGCC-CUGgGaggcCCCUgUCCGCg -3' miRNA: 3'- -UGGUC-CCCGGaGACgC----GGGAgAGGCG- -5' |
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29099 | 3' | -64 | NC_006146.1 | + | 128210 | 0.68 | 0.454703 |
Target: 5'- cGCUGGGGGgCUCUGCcagccucaggcaGCCCa--CCGCg -3' miRNA: 3'- -UGGUCCCCgGAGACG------------CGGGagaGGCG- -5' |
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29099 | 3' | -64 | NC_006146.1 | + | 104447 | 0.68 | 0.446049 |
Target: 5'- -aCAGGGGCg---GCGCCCUCggcaggcagCUGCg -3' miRNA: 3'- ugGUCCCCGgagaCGCGGGAGa--------GGCG- -5' |
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29099 | 3' | -64 | NC_006146.1 | + | 4960 | 0.68 | 0.446049 |
Target: 5'- gACCAGGGGCCacgagagccUCcugGCGgCCUCacuaaCGCg -3' miRNA: 3'- -UGGUCCCCGG---------AGa--CGCgGGAGag---GCG- -5' |
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29099 | 3' | -64 | NC_006146.1 | + | 41842 | 0.68 | 0.440901 |
Target: 5'- -gCGGGGGCUgUCUGCGCCggcgucugggcccagCUCgggCUGCg -3' miRNA: 3'- ugGUCCCCGG-AGACGCGG---------------GAGa--GGCG- -5' |
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29099 | 3' | -64 | NC_006146.1 | + | 40537 | 0.68 | 0.437488 |
Target: 5'- cCCGGGGGagCUCUcaGCCC-CUCUGCa -3' miRNA: 3'- uGGUCCCCg-GAGAcgCGGGaGAGGCG- -5' |
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29099 | 3' | -64 | NC_006146.1 | + | 19967 | 0.68 | 0.437488 |
Target: 5'- gGCCGGGGGCgUCUGCgaggucaggagGCCCcacgaCGCc -3' miRNA: 3'- -UGGUCCCCGgAGACG-----------CGGGagag-GCG- -5' |
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29099 | 3' | -64 | NC_006146.1 | + | 48359 | 0.68 | 0.437488 |
Target: 5'- gGCCAGcGGGCCggccucgaguUCcGCGaaccaCCCgggCUCCGCg -3' miRNA: 3'- -UGGUC-CCCGG----------AGaCGC-----GGGa--GAGGCG- -5' |
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29099 | 3' | -64 | NC_006146.1 | + | 71254 | 0.68 | 0.428181 |
Target: 5'- gGCCuggcgggGGGcGGCCUCUaCGCCUUcCUCCGg -3' miRNA: 3'- -UGG-------UCC-CCGGAGAcGCGGGA-GAGGCg -5' |
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29099 | 3' | -64 | NC_006146.1 | + | 15410 | 0.69 | 0.412384 |
Target: 5'- cGCCAGGuGGCCUCagagggGCugGCCCgg-CUGCa -3' miRNA: 3'- -UGGUCC-CCGGAGa-----CG--CGGGagaGGCG- -5' |
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29099 | 3' | -64 | NC_006146.1 | + | 45533 | 0.69 | 0.412384 |
Target: 5'- gGCCu-GGGCCUCcuugggcuugGcCGCCCUggcCUCCGCg -3' miRNA: 3'- -UGGucCCCGGAGa---------C-GCGGGA---GAGGCG- -5' |
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29099 | 3' | -64 | NC_006146.1 | + | 127678 | 0.69 | 0.38819 |
Target: 5'- uCCAGGGGggcuCCUCUcaccagcaGCGCCCcaUCcCCGCc -3' miRNA: 3'- uGGUCCCC----GGAGA--------CGCGGG--AGaGGCG- -5' |
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29099 | 3' | -64 | NC_006146.1 | + | 108534 | 0.69 | 0.379556 |
Target: 5'- gGCCAGGGGCCUCUccgGCGCggcguuggaguggCUgggCUUgGCu -3' miRNA: 3'- -UGGUCCCCGGAGA---CGCG-------------GGa--GAGgCG- -5' |
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29099 | 3' | -64 | NC_006146.1 | + | 2450 | 0.7 | 0.373357 |
Target: 5'- gGCCGGGGGCgCggcccggcgccagccCUGCcCCCUCUCCc- -3' miRNA: 3'- -UGGUCCCCG-Ga--------------GACGcGGGAGAGGcg -5' |
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29099 | 3' | -64 | NC_006146.1 | + | 1518 | 0.7 | 0.373357 |
Target: 5'- gGCCGGGGGCgCggcccggcgccagccCUGCcCCCUCUCCc- -3' miRNA: 3'- -UGGUCCCCG-Ga--------------GACGcGGGAGAGGcg -5' |
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29099 | 3' | -64 | NC_006146.1 | + | 587 | 0.7 | 0.373357 |
Target: 5'- gGCCGGGGGCgCggcccggcgccagccCUGCcCCCUCUCCc- -3' miRNA: 3'- -UGGUCCCCG-Ga--------------GACGcGGGAGAGGcg -5' |
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29099 | 3' | -64 | NC_006146.1 | + | 3382 | 0.7 | 0.373357 |
Target: 5'- gGCCGGGGGCgCggcccggcgccagccCUGCcCCCUCUCCc- -3' miRNA: 3'- -UGGUCCCCG-Ga--------------GACGcGGGAGAGGcg -5' |
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29099 | 3' | -64 | NC_006146.1 | + | 68932 | 0.7 | 0.364948 |
Target: 5'- gACC-GGGGCC--UGgGCCCaggagaUCUCCGCc -3' miRNA: 3'- -UGGuCCCCGGagACgCGGG------AGAGGCG- -5' |
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29099 | 3' | -64 | NC_006146.1 | + | 98461 | 0.7 | 0.364948 |
Target: 5'- cCCGGGGGCCagucUCUGgGUCag-UCCGCg -3' miRNA: 3'- uGGUCCCCGG----AGACgCGGgagAGGCG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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