miRNA display CGI


Results 61 - 80 of 157 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29099 3' -64 NC_006146.1 + 81129 0.68 0.463447
Target:  5'- gGCCAuGGGCCcCU-CGUCCUCgauuUCCGCc -3'
miRNA:   3'- -UGGUcCCCGGaGAcGCGGGAG----AGGCG- -5'
29099 3' -64 NC_006146.1 + 81469 0.66 0.564617
Target:  5'- cGCCGGGGGCCaacUCUacaaCGUCCUa--CGCg -3'
miRNA:   3'- -UGGUCCCCGG---AGAc---GCGGGAgagGCG- -5'
29099 3' -64 NC_006146.1 + 88966 0.7 0.357417
Target:  5'- cGCC-GGGGCCUUUGaaCCCUUUCCa- -3'
miRNA:   3'- -UGGuCCCCGGAGACgcGGGAGAGGcg -5'
29099 3' -64 NC_006146.1 + 91901 0.67 0.526913
Target:  5'- gGCCuGGGcucGCUUUUGCGaCCC-CUCCGa -3'
miRNA:   3'- -UGGuCCC---CGGAGACGC-GGGaGAGGCg -5'
29099 3' -64 NC_006146.1 + 92780 0.68 0.460815
Target:  5'- --aAGGGGCCUCUGC-CUCUCaggcuucccugucuUCCGg -3'
miRNA:   3'- uggUCCCCGGAGACGcGGGAG--------------AGGCg -5'
29099 3' -64 NC_006146.1 + 93147 0.67 0.508411
Target:  5'- cGCUA-GGGCCUCUGCGgCaCUaUCCGg -3'
miRNA:   3'- -UGGUcCCCGGAGACGCgG-GAgAGGCg -5'
29099 3' -64 NC_006146.1 + 94318 0.67 0.536258
Target:  5'- aAUCcGGuGCCUCUGCgGCCCcaUC-CCGCa -3'
miRNA:   3'- -UGGuCCcCGGAGACG-CGGG--AGaGGCG- -5'
29099 3' -64 NC_006146.1 + 98461 0.7 0.364948
Target:  5'- cCCGGGGGCCagucUCUGgGUCag-UCCGCg -3'
miRNA:   3'- uGGUCCCCGG----AGACgCGGgagAGGCG- -5'
29099 3' -64 NC_006146.1 + 99210 0.66 0.583742
Target:  5'- uCCAGGGaggccgcgGCCUCggcGCGCCCgaccaCCGUc -3'
miRNA:   3'- uGGUCCC--------CGGAGa--CGCGGGaga--GGCG- -5'
29099 3' -64 NC_006146.1 + 101039 0.67 0.508411
Target:  5'- gACCu-GGGCCUCUaCGCCCgacCUCC-Cg -3'
miRNA:   3'- -UGGucCCCGGAGAcGCGGGa--GAGGcG- -5'
29099 3' -64 NC_006146.1 + 102004 0.72 0.28189
Target:  5'- uGCUAGGGG-CUCUGgGCUgUCUCCcgGCu -3'
miRNA:   3'- -UGGUCCCCgGAGACgCGGgAGAGG--CG- -5'
29099 3' -64 NC_006146.1 + 102824 0.73 0.219584
Target:  5'- cGCgCGGGGG-CUCUGCGCUugCUCgcgCCGCu -3'
miRNA:   3'- -UG-GUCCCCgGAGACGCGG--GAGa--GGCG- -5'
29099 3' -64 NC_006146.1 + 102901 0.75 0.16148
Target:  5'- cGCCAGGGGCCguguggcguggCUGCGCCCcaagaUCgugggCUGCc -3'
miRNA:   3'- -UGGUCCCCGGa----------GACGCGGG-----AGa----GGCG- -5'
29099 3' -64 NC_006146.1 + 104182 0.72 0.275689
Target:  5'- uCCAGucgcaGGGCCgUCUGCGCCCccaCggggCCGCa -3'
miRNA:   3'- uGGUC-----CCCGG-AGACGCGGGa--Ga---GGCG- -5'
29099 3' -64 NC_006146.1 + 104447 0.68 0.446049
Target:  5'- -aCAGGGGCg---GCGCCCUCggcaggcagCUGCg -3'
miRNA:   3'- ugGUCCCCGgagaCGCGGGAGa--------GGCG- -5'
29099 3' -64 NC_006146.1 + 107788 0.68 0.472278
Target:  5'- cCCAGGGGCaC-CUGCGCagggUCUCCu- -3'
miRNA:   3'- uGGUCCCCG-GaGACGCGgg--AGAGGcg -5'
29099 3' -64 NC_006146.1 + 108534 0.69 0.379556
Target:  5'- gGCCAGGGGCCUCUccgGCGCggcguuggaguggCUgggCUUgGCu -3'
miRNA:   3'- -UGGUCCCCGGAGA---CGCG-------------GGa--GAGgCG- -5'
29099 3' -64 NC_006146.1 + 111854 0.71 0.314551
Target:  5'- uGCguGucGGCCcgCUGCGCCCUCaCCGCc -3'
miRNA:   3'- -UGguCc-CCGGa-GACGCGGGAGaGGCG- -5'
29099 3' -64 NC_006146.1 + 114130 0.66 0.555115
Target:  5'- cACCgAGGaGGCC--UGCGCgUgCUCCGCg -3'
miRNA:   3'- -UGG-UCC-CCGGagACGCGgGaGAGGCG- -5'
29099 3' -64 NC_006146.1 + 114313 0.67 0.536258
Target:  5'- gACCGGcGGCgggCUCgGCGCCCgg-CCGCc -3'
miRNA:   3'- -UGGUCcCCG---GAGaCGCGGGagaGGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.