miRNA display CGI


Results 61 - 80 of 157 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29099 3' -64 NC_006146.1 + 135186 0.76 0.136271
Target:  5'- gGCCGGGGGCCgg-GUGCCCcugggUCCGCu -3'
miRNA:   3'- -UGGUCCCCGGagaCGCGGGag---AGGCG- -5'
29099 3' -64 NC_006146.1 + 130530 0.72 0.257742
Target:  5'- cGCCGGGcGGCgaCcaggGgGCCUUCUCCGCc -3'
miRNA:   3'- -UGGUCC-CCGgaGa---CgCGGGAGAGGCG- -5'
29099 3' -64 NC_006146.1 + 129273 0.7 0.328395
Target:  5'- gAUguGGGGCUggUCUGCGCCCgggC-CCaGCg -3'
miRNA:   3'- -UGguCCCCGG--AGACGCGGGa--GaGG-CG- -5'
29099 3' -64 NC_006146.1 + 128210 0.68 0.454703
Target:  5'- cGCUGGGGGgCUCUGCcagccucaggcaGCCCa--CCGCg -3'
miRNA:   3'- -UGGUCCCCgGAGACG------------CGGGagaGGCG- -5'
29099 3' -64 NC_006146.1 + 127907 0.67 0.49019
Target:  5'- aACCuguuugcGGGcGCCgggCUGCuGCCCacaaaCUCCGCg -3'
miRNA:   3'- -UGGu------CCC-CGGa--GACG-CGGGa----GAGGCG- -5'
29099 3' -64 NC_006146.1 + 127678 0.69 0.38819
Target:  5'- uCCAGGGGggcuCCUCUcaccagcaGCGCCCcaUCcCCGCc -3'
miRNA:   3'- uGGUCCCC----GGAGA--------CGCGGG--AGaGGCG- -5'
29099 3' -64 NC_006146.1 + 127130 0.66 0.583742
Target:  5'- gACCuGGuGGuccCCUCUGCGgcccacUCCUCUCUGUc -3'
miRNA:   3'- -UGGuCC-CC---GGAGACGC------GGGAGAGGCG- -5'
29099 3' -64 NC_006146.1 + 126398 1.1 0.000486
Target:  5'- cACCAGGGGCCUCUGCGCCCUCUCCGCg -3'
miRNA:   3'- -UGGUCCCCGGAGACGCGGGAGAGGCG- -5'
29099 3' -64 NC_006146.1 + 125954 0.66 0.583742
Target:  5'- cCCcGGGGCCUCcccGCGCCC-CUggCCa- -3'
miRNA:   3'- uGGuCCCCGGAGa--CGCGGGaGA--GGcg -5'
29099 3' -64 NC_006146.1 + 124171 0.67 0.499263
Target:  5'- gGCCAGcGuGGCCUCcGCcCgCCUCggagCCGCc -3'
miRNA:   3'- -UGGUC-C-CCGGAGaCGcG-GGAGa---GGCG- -5'
29099 3' -64 NC_006146.1 + 123704 0.73 0.226809
Target:  5'- gGCCAGGGGCCUg-GCGCUcggggcggcggcgggCUCUCCcCa -3'
miRNA:   3'- -UGGUCCCCGGAgaCGCGG---------------GAGAGGcG- -5'
29099 3' -64 NC_006146.1 + 122631 0.66 0.583742
Target:  5'- gGCCGGGGcCCUCUuucGCGCCaggacggcggCgggggccCUCCGCg -3'
miRNA:   3'- -UGGUCCCcGGAGA---CGCGG----------Ga------GAGGCG- -5'
29099 3' -64 NC_006146.1 + 122041 0.67 0.508411
Target:  5'- cGCCuGGaGGCCgacggCUucGCGCCCgcCUCCGa -3'
miRNA:   3'- -UGGuCC-CCGGa----GA--CGCGGGa-GAGGCg -5'
29099 3' -64 NC_006146.1 + 120848 0.67 0.517629
Target:  5'- cCUGGaGGGCCUgcuggaCUGCGCCUccCUCCuGCg -3'
miRNA:   3'- uGGUC-CCCGGA------GACGCGGGa-GAGG-CG- -5'
29099 3' -64 NC_006146.1 + 117909 0.7 0.328395
Target:  5'- gGCCagaagAGGGGCCUCgagaCGCCCgCcCCGCc -3'
miRNA:   3'- -UGG-----UCCCCGGAGac--GCGGGaGaGGCG- -5'
29099 3' -64 NC_006146.1 + 115090 0.66 0.574161
Target:  5'- gGCCGGGacGGCCUCUuccacCGCCC-CgagUCGCu -3'
miRNA:   3'- -UGGUCC--CCGGAGAc----GCGGGaGa--GGCG- -5'
29099 3' -64 NC_006146.1 + 114730 0.66 0.593355
Target:  5'- uGCCAGGGGCagaacGCaGCCUaucCUCUGCu -3'
miRNA:   3'- -UGGUCCCCGgaga-CG-CGGGa--GAGGCG- -5'
29099 3' -64 NC_006146.1 + 114313 0.67 0.536258
Target:  5'- gACCGGcGGCgggCUCgGCGCCCgg-CCGCc -3'
miRNA:   3'- -UGGUCcCCG---GAGaCGCGGGagaGGCG- -5'
29099 3' -64 NC_006146.1 + 114130 0.66 0.555115
Target:  5'- cACCgAGGaGGCC--UGCGCgUgCUCCGCg -3'
miRNA:   3'- -UGG-UCC-CCGGagACGCGgGaGAGGCG- -5'
29099 3' -64 NC_006146.1 + 111854 0.71 0.314551
Target:  5'- uGCguGucGGCCcgCUGCGCCCUCaCCGCc -3'
miRNA:   3'- -UGguCc-CCGGa-GACGCGGGAGaGGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.