miRNA display CGI


Results 41 - 60 of 157 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29099 3' -64 NC_006146.1 + 102004 0.72 0.28189
Target:  5'- uGCUAGGGG-CUCUGgGCUgUCUCCcgGCu -3'
miRNA:   3'- -UGGUCCCCgGAGACgCGGgAGAGG--CG- -5'
29099 3' -64 NC_006146.1 + 136394 0.76 0.136271
Target:  5'- gGCCGGGGGCCgg-GUGCCCcugggUCCGCu -3'
miRNA:   3'- -UGGUCCCCGGagaCGCGGGag---AGGCG- -5'
29099 3' -64 NC_006146.1 + 54186 0.79 0.091687
Target:  5'- cGCCAGGGGgaUCUGCaccuGCCCggUCUCCGCa -3'
miRNA:   3'- -UGGUCCCCggAGACG----CGGG--AGAGGCG- -5'
29099 3' -64 NC_006146.1 + 104182 0.72 0.275689
Target:  5'- uCCAGucgcaGGGCCgUCUGCGCCCccaCggggCCGCa -3'
miRNA:   3'- uGGUC-----CCCGG-AGACGCGGGa--Ga---GGCG- -5'
29099 3' -64 NC_006146.1 + 55706 0.79 0.089416
Target:  5'- cGCCGGGGGgCUCUGCccGCCgCUggcCUCCGCg -3'
miRNA:   3'- -UGGUCCCCgGAGACG--CGG-GA---GAGGCG- -5'
29099 3' -64 NC_006146.1 + 4960 0.68 0.446049
Target:  5'- gACCAGGGGCCacgagagccUCcugGCGgCCUCacuaaCGCg -3'
miRNA:   3'- -UGGUCCCCGG---------AGa--CGCgGGAGag---GCG- -5'
29099 3' -64 NC_006146.1 + 135186 0.76 0.136271
Target:  5'- gGCCGGGGGCCgg-GUGCCCcugggUCCGCu -3'
miRNA:   3'- -UGGUCCCCGGagaCGCGGGag---AGGCG- -5'
29099 3' -64 NC_006146.1 + 45533 0.69 0.412384
Target:  5'- gGCCu-GGGCCUCcuugggcuugGcCGCCCUggcCUCCGCg -3'
miRNA:   3'- -UGGucCCCGGAGa---------C-GCGGGA---GAGGCG- -5'
29099 3' -64 NC_006146.1 + 68932 0.7 0.364948
Target:  5'- gACC-GGGGCC--UGgGCCCaggagaUCUCCGCc -3'
miRNA:   3'- -UGGuCCCCGGagACgCGGG------AGAGGCG- -5'
29099 3' -64 NC_006146.1 + 22500 0.7 0.342685
Target:  5'- aACCAGGGGaCCg--GCGCCCcagagccccUCgggUCCGCc -3'
miRNA:   3'- -UGGUCCCC-GGagaCGCGGG---------AG---AGGCG- -5'
29099 3' -64 NC_006146.1 + 13266 0.7 0.342685
Target:  5'- aACCAGGGGaCCg--GCGCCCcagagccccUCgggUCCGCc -3'
miRNA:   3'- -UGGUCCCC-GGagaCGCGGG---------AG---AGGCG- -5'
29099 3' -64 NC_006146.1 + 22822 0.71 0.294621
Target:  5'- -aCAGGGGCCUCccaGgGCCCUCcagUCCa- -3'
miRNA:   3'- ugGUCCCCGGAGa--CgCGGGAG---AGGcg -5'
29099 3' -64 NC_006146.1 + 13588 0.71 0.294621
Target:  5'- -aCAGGGGCCUCccaGgGCCCUCcagUCCa- -3'
miRNA:   3'- ugGUCCCCGGAGa--CgCGGGAG---AGGcg -5'
29099 3' -64 NC_006146.1 + 137509 0.76 0.136271
Target:  5'- gGCCGGGGGCCgg-GUGCCCcugggUCCGCu -3'
miRNA:   3'- -UGGUCCCCGGagaCGCGGGag---AGGCG- -5'
29099 3' -64 NC_006146.1 + 137230 0.76 0.136271
Target:  5'- gGCCGGGGGCCgg-GUGCCCcugggUCCGCu -3'
miRNA:   3'- -UGGUCCCCGGagaCGCGGGag---AGGCG- -5'
29099 3' -64 NC_006146.1 + 136858 0.76 0.136271
Target:  5'- gGCCGGGGGCCgg-GUGCCCcugggUCCGCu -3'
miRNA:   3'- -UGGUCCCCGGagaCGCGGGag---AGGCG- -5'
29099 3' -64 NC_006146.1 + 136580 0.76 0.136271
Target:  5'- gGCCGGGGGCCgg-GUGCCCcugggUCCGCu -3'
miRNA:   3'- -UGGUCCCCGGagaCGCGGGag---AGGCG- -5'
29099 3' -64 NC_006146.1 + 136115 0.76 0.136271
Target:  5'- gGCCGGGGGCCgg-GUGCCCcugggUCCGCu -3'
miRNA:   3'- -UGGUCCCCGGagaCGCGGGag---AGGCG- -5'
29099 3' -64 NC_006146.1 + 135836 0.76 0.136271
Target:  5'- gGCCGGGGGCCgg-GUGCCCcugggUCCGCu -3'
miRNA:   3'- -UGGUCCCCGGagaCGCGGGag---AGGCG- -5'
29099 3' -64 NC_006146.1 + 135465 0.76 0.136271
Target:  5'- gGCCGGGGGCCgg-GUGCCCcugggUCCGCu -3'
miRNA:   3'- -UGGUCCCCGGagaCGCGGGag---AGGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.