miRNA display CGI


Results 61 - 80 of 157 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29099 3' -64 NC_006146.1 + 19744 0.71 0.294621
Target:  5'- -aCAGGGGCCUCccaGgGCCCUCcagUCCa- -3'
miRNA:   3'- ugGUCCCCGGAGa--CgCGGGAG---AGGcg -5'
29099 3' -64 NC_006146.1 + 28977 0.71 0.294621
Target:  5'- -aCAGGGGCCUCccaGgGCCCUCcagUCCa- -3'
miRNA:   3'- ugGUCCCCGGAGa--CgCGGGAG---AGGcg -5'
29099 3' -64 NC_006146.1 + 135836 0.76 0.136271
Target:  5'- gGCCGGGGGCCgg-GUGCCCcugggUCCGCu -3'
miRNA:   3'- -UGGUCCCCGGagaCGCGGGag---AGGCG- -5'
29099 3' -64 NC_006146.1 + 136115 0.76 0.136271
Target:  5'- gGCCGGGGGCCgg-GUGCCCcugggUCCGCu -3'
miRNA:   3'- -UGGUCCCCGGagaCGCGGGag---AGGCG- -5'
29099 3' -64 NC_006146.1 + 136487 0.76 0.136271
Target:  5'- gGCCGGGGGCCgg-GUGCCCcugggUCCGCu -3'
miRNA:   3'- -UGGUCCCCGGagaCGCGGGag---AGGCG- -5'
29099 3' -64 NC_006146.1 + 136765 0.76 0.136271
Target:  5'- gGCCGGGGGCCgg-GUGCCCcugggUCCGCu -3'
miRNA:   3'- -UGGUCCCCGGagaCGCGGGag---AGGCG- -5'
29099 3' -64 NC_006146.1 + 137230 0.76 0.136271
Target:  5'- gGCCGGGGGCCgg-GUGCCCcugggUCCGCu -3'
miRNA:   3'- -UGGUCCCCGGagaCGCGGGag---AGGCG- -5'
29099 3' -64 NC_006146.1 + 137509 0.76 0.136271
Target:  5'- gGCCGGGGGCCgg-GUGCCCcugggUCCGCu -3'
miRNA:   3'- -UGGUCCCCGGagaCGCGGGag---AGGCG- -5'
29099 3' -64 NC_006146.1 + 102004 0.72 0.28189
Target:  5'- uGCUAGGGG-CUCUGgGCUgUCUCCcgGCu -3'
miRNA:   3'- -UGGUCCCCgGAGACgCGGgAGAGG--CG- -5'
29099 3' -64 NC_006146.1 + 159273 0.72 0.28189
Target:  5'- cGCCAcGcGGGCCUCgGgGCCCUCgcagUCgGCa -3'
miRNA:   3'- -UGGU-C-CCCGGAGaCgCGGGAG----AGgCG- -5'
29099 3' -64 NC_006146.1 + 160358 0.66 0.592392
Target:  5'- -aCGGGGaacuggcGUCUCaGCGCCCUUggcaggCCGCc -3'
miRNA:   3'- ugGUCCC-------CGGAGaCGCGGGAGa-----GGCG- -5'
29099 3' -64 NC_006146.1 + 99210 0.66 0.583742
Target:  5'- uCCAGGGaggccgcgGCCUCggcGCGCCCgaccaCCGUc -3'
miRNA:   3'- uGGUCCC--------CGGAGa--CGCGGGaga--GGCG- -5'
29099 3' -64 NC_006146.1 + 19422 0.7 0.342685
Target:  5'- aACCAGGGGaCCg--GCGCCCcagagccccUCgggUCCGCc -3'
miRNA:   3'- -UGGUCCCC-GGagaCGCGGG---------AG---AGGCG- -5'
29099 3' -64 NC_006146.1 + 28656 0.7 0.342685
Target:  5'- aACCAGGGGaCCg--GCGCCCcagagccccUCgggUCCGCc -3'
miRNA:   3'- -UGGUCCCC-GGagaCGCGGG---------AG---AGGCG- -5'
29099 3' -64 NC_006146.1 + 45533 0.69 0.412384
Target:  5'- gGCCu-GGGCCUCcuugggcuugGcCGCCCUggcCUCCGCg -3'
miRNA:   3'- -UGGucCCCGGAGa---------C-GCGGGA---GAGGCG- -5'
29099 3' -64 NC_006146.1 + 4960 0.68 0.446049
Target:  5'- gACCAGGGGCCacgagagccUCcugGCGgCCUCacuaaCGCg -3'
miRNA:   3'- -UGGUCCCCGG---------AGa--CGCgGGAGag---GCG- -5'
29099 3' -64 NC_006146.1 + 120848 0.67 0.517629
Target:  5'- cCUGGaGGGCCUgcuggaCUGCGCCUccCUCCuGCg -3'
miRNA:   3'- uGGUC-CCCGGA------GACGCGGGa-GAGG-CG- -5'
29099 3' -64 NC_006146.1 + 52925 0.67 0.526913
Target:  5'- cCCGGGGGCg-CUG-GCCUcgUCCGCc -3'
miRNA:   3'- uGGUCCCCGgaGACgCGGGagAGGCG- -5'
29099 3' -64 NC_006146.1 + 155867 0.66 0.555115
Target:  5'- cCCGGcGGGCCcuggCcagGCGCCC-CUCCcugGCa -3'
miRNA:   3'- uGGUC-CCCGGa---Ga--CGCGGGaGAGG---CG- -5'
29099 3' -64 NC_006146.1 + 33243 0.66 0.564617
Target:  5'- cGCCGGcggguccgccGGGCCgCUGC-CCCgCUCCGg -3'
miRNA:   3'- -UGGUC----------CCCGGaGACGcGGGaGAGGCg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.