miRNA display CGI


Results 81 - 100 of 157 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29099 3' -64 NC_006146.1 + 142972 0.7 0.328395
Target:  5'- uGCCAGGGGgCUUCcGCccuaGCCCUUggCCGUg -3'
miRNA:   3'- -UGGUCCCC-GGAGaCG----CGGGAGa-GGCG- -5'
29099 3' -64 NC_006146.1 + 47743 0.67 0.517629
Target:  5'- uCC-GGGGCCUCcucgcGCGCCCUggcgaguacggcCUCCa- -3'
miRNA:   3'- uGGuCCCCGGAGa----CGCGGGA------------GAGGcg -5'
29099 3' -64 NC_006146.1 + 519 0.7 0.342685
Target:  5'- cCCAGGGgaggcccgGCCUCcacacaCGgCCUCUCCGCg -3'
miRNA:   3'- uGGUCCC--------CGGAGac----GCgGGAGAGGCG- -5'
29099 3' -64 NC_006146.1 + 115090 0.66 0.574161
Target:  5'- gGCCGGGacGGCCUCUuccacCGCCC-CgagUCGCu -3'
miRNA:   3'- -UGGUCC--CCGGAGAc----GCGGGaGa--GGCG- -5'
29099 3' -64 NC_006146.1 + 13054 0.7 0.335484
Target:  5'- uCCAGGcGGCgCUCgGUGCCCgucccCUCCGg -3'
miRNA:   3'- uGGUCC-CCG-GAGaCGCGGGa----GAGGCg -5'
29099 3' -64 NC_006146.1 + 157528 0.7 0.335484
Target:  5'- gACUAGGGGCC-CUGgGCCCcgagggcggCUCCc- -3'
miRNA:   3'- -UGGUCCCCGGaGACgCGGGa--------GAGGcg -5'
29099 3' -64 NC_006146.1 + 24292 0.67 0.526913
Target:  5'- gGCCGGGGGCUggacgCUGUuuCCC-CUCCa- -3'
miRNA:   3'- -UGGUCCCCGGa----GACGc-GGGaGAGGcg -5'
29099 3' -64 NC_006146.1 + 154450 0.7 0.335484
Target:  5'- gACUAGGGGCC-CUGgGCCCcgagggcggCUCCc- -3'
miRNA:   3'- -UGGUCCCCGGaGACgCGGGa--------GAGGcg -5'
29099 3' -64 NC_006146.1 + 23070 0.68 0.454703
Target:  5'- cGCCuucaccGGCCucaUCUGCGCCUUCUCCu- -3'
miRNA:   3'- -UGGucc---CCGG---AGACGCGGGAGAGGcg -5'
29099 3' -64 NC_006146.1 + 44820 0.68 0.454703
Target:  5'- gACCucuguaGGGGGCCg--GCGCCC-CUCgUGCc -3'
miRNA:   3'- -UGG------UCCCCGGagaCGCGGGaGAG-GCG- -5'
29099 3' -64 NC_006146.1 + 77969 0.68 0.463447
Target:  5'- aGCCGGuGGCCUUggaggUGCcgGUCCUCUCUGUc -3'
miRNA:   3'- -UGGUCcCCGGAG-----ACG--CGGGAGAGGCG- -5'
29099 3' -64 NC_006146.1 + 107788 0.68 0.472278
Target:  5'- cCCAGGGGCaC-CUGCGCagggUCUCCu- -3'
miRNA:   3'- uGGUCCCCG-GaGACGCGgg--AGAGGcg -5'
29099 3' -64 NC_006146.1 + 129273 0.7 0.328395
Target:  5'- gAUguGGGGCUggUCUGCGCCCgggC-CCaGCg -3'
miRNA:   3'- -UGguCCCCGG--AGACGCGGGa--GaGG-CG- -5'
29099 3' -64 NC_006146.1 + 117909 0.7 0.328395
Target:  5'- gGCCagaagAGGGGCCUCgagaCGCCCgCcCCGCc -3'
miRNA:   3'- -UGG-----UCCCCGGAGac--GCGGGaGaGGCG- -5'
29099 3' -64 NC_006146.1 + 81129 0.68 0.463447
Target:  5'- gGCCAuGGGCCcCU-CGUCCUCgauuUCCGCc -3'
miRNA:   3'- -UGGUcCCCGGaGAcGCGGGAG----AGGCG- -5'
29099 3' -64 NC_006146.1 + 71870 0.7 0.334771
Target:  5'- gGCCcugGGGGGCCUCUacacggccgucacGCGgaCCCUC-CUGCg -3'
miRNA:   3'- -UGG---UCCCCGGAGA-------------CGC--GGGAGaGGCG- -5'
29099 3' -64 NC_006146.1 + 142138 0.7 0.335484
Target:  5'- gACUAGGGGCC-CUGgGCCCcgagggcggCUCCc- -3'
miRNA:   3'- -UGGUCCCCGGaGACgCGGGa--------GAGGcg -5'
29099 3' -64 NC_006146.1 + 145216 0.7 0.335484
Target:  5'- gACUAGGGGCC-CUGgGCCCcgagggcggCUCCc- -3'
miRNA:   3'- -UGGUCCCCGGaGACgCGGGa--------GAGGcg -5'
29099 3' -64 NC_006146.1 + 148294 0.7 0.335484
Target:  5'- gACUAGGGGCC-CUGgGCCCcgagggcggCUCCc- -3'
miRNA:   3'- -UGGUCCCCGGaGACgCGGGa--------GAGGcg -5'
29099 3' -64 NC_006146.1 + 151372 0.7 0.335484
Target:  5'- gACUAGGGGCC-CUGgGCCCcgagggcggCUCCc- -3'
miRNA:   3'- -UGGUCCCCGGaGACgCGGGa--------GAGGcg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.