miRNA display CGI


Results 101 - 120 of 157 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29099 3' -64 NC_006146.1 + 519 0.7 0.342685
Target:  5'- cCCAGGGgaggcccgGCCUCcacacaCGgCCUCUCCGCg -3'
miRNA:   3'- uGGUCCC--------CGGAGac----GCgGGAGAGGCG- -5'
29099 3' -64 NC_006146.1 + 157528 0.7 0.335484
Target:  5'- gACUAGGGGCC-CUGgGCCCcgagggcggCUCCc- -3'
miRNA:   3'- -UGGUCCCCGGaGACgCGGGa--------GAGGcg -5'
29099 3' -64 NC_006146.1 + 154450 0.7 0.335484
Target:  5'- gACUAGGGGCC-CUGgGCCCcgagggcggCUCCc- -3'
miRNA:   3'- -UGGUCCCCGGaGACgCGGGa--------GAGGcg -5'
29099 3' -64 NC_006146.1 + 129273 0.7 0.328395
Target:  5'- gAUguGGGGCUggUCUGCGCCCgggC-CCaGCg -3'
miRNA:   3'- -UGguCCCCGG--AGACGCGGGa--GaGG-CG- -5'
29099 3' -64 NC_006146.1 + 117909 0.7 0.328395
Target:  5'- gGCCagaagAGGGGCCUCgagaCGCCCgCcCCGCc -3'
miRNA:   3'- -UGG-----UCCCCGGAGac--GCGGGaGaGGCG- -5'
29099 3' -64 NC_006146.1 + 151372 0.7 0.335484
Target:  5'- gACUAGGGGCC-CUGgGCCCcgagggcggCUCCc- -3'
miRNA:   3'- -UGGUCCCCGGaGACgCGGGa--------GAGGcg -5'
29099 3' -64 NC_006146.1 + 142138 0.7 0.335484
Target:  5'- gACUAGGGGCC-CUGgGCCCcgagggcggCUCCc- -3'
miRNA:   3'- -UGGUCCCCGGaGACgCGGGa--------GAGGcg -5'
29099 3' -64 NC_006146.1 + 50908 0.7 0.349996
Target:  5'- gGCCu-GGGCCUCcGUGCCCaagaugugUCUCCGa -3'
miRNA:   3'- -UGGucCCCGGAGaCGCGGG--------AGAGGCg -5'
29099 3' -64 NC_006146.1 + 587 0.7 0.373357
Target:  5'- gGCCGGGGGCgCggcccggcgccagccCUGCcCCCUCUCCc- -3'
miRNA:   3'- -UGGUCCCCG-Ga--------------GACGcGGGAGAGGcg -5'
29099 3' -64 NC_006146.1 + 1518 0.7 0.373357
Target:  5'- gGCCGGGGGCgCggcccggcgccagccCUGCcCCCUCUCCc- -3'
miRNA:   3'- -UGGUCCCCG-Ga--------------GACGcGGGAGAGGcg -5'
29099 3' -64 NC_006146.1 + 107788 0.68 0.472278
Target:  5'- cCCAGGGGCaC-CUGCGCagggUCUCCu- -3'
miRNA:   3'- uGGUCCCCG-GaGACGCGgg--AGAGGcg -5'
29099 3' -64 NC_006146.1 + 81129 0.68 0.463447
Target:  5'- gGCCAuGGGCCcCU-CGUCCUCgauuUCCGCc -3'
miRNA:   3'- -UGGUcCCCGGaGAcGCGGGAG----AGGCG- -5'
29099 3' -64 NC_006146.1 + 77969 0.68 0.463447
Target:  5'- aGCCGGuGGCCUUggaggUGCcgGUCCUCUCUGUc -3'
miRNA:   3'- -UGGUCcCCGGAG-----ACG--CGGGAGAGGCG- -5'
29099 3' -64 NC_006146.1 + 44820 0.68 0.454703
Target:  5'- gACCucuguaGGGGGCCg--GCGCCC-CUCgUGCc -3'
miRNA:   3'- -UGG------UCCCCGGagaCGCGGGaGAG-GCG- -5'
29099 3' -64 NC_006146.1 + 23070 0.68 0.454703
Target:  5'- cGCCuucaccGGCCucaUCUGCGCCUUCUCCu- -3'
miRNA:   3'- -UGGucc---CCGG---AGACGCGGGAGAGGcg -5'
29099 3' -64 NC_006146.1 + 15410 0.69 0.412384
Target:  5'- cGCCAGGuGGCCUCagagggGCugGCCCgg-CUGCa -3'
miRNA:   3'- -UGGUCC-CCGGAGa-----CG--CGGGagaGGCG- -5'
29099 3' -64 NC_006146.1 + 108534 0.69 0.379556
Target:  5'- gGCCAGGGGCCUCUccgGCGCggcguuggaguggCUgggCUUgGCu -3'
miRNA:   3'- -UGGUCCCCGGAGA---CGCG-------------GGa--GAGgCG- -5'
29099 3' -64 NC_006146.1 + 2450 0.7 0.373357
Target:  5'- gGCCGGGGGCgCggcccggcgccagccCUGCcCCCUCUCCc- -3'
miRNA:   3'- -UGGUCCCCG-Ga--------------GACGcGGGAGAGGcg -5'
29099 3' -64 NC_006146.1 + 3382 0.7 0.373357
Target:  5'- gGCCGGGGGCgCggcccggcgccagccCUGCcCCCUCUCCc- -3'
miRNA:   3'- -UGGUCCCCG-Ga--------------GACGcGGGAGAGGcg -5'
29099 3' -64 NC_006146.1 + 148294 0.7 0.335484
Target:  5'- gACUAGGGGCC-CUGgGCCCcgagggcggCUCCc- -3'
miRNA:   3'- -UGGUCCCCGGaGACgCGGGa--------GAGGcg -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.