Results 41 - 60 of 157 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
29099 | 3' | -64 | NC_006146.1 | + | 122631 | 0.66 | 0.583742 |
Target: 5'- gGCCGGGGcCCUCUuucGCGCCaggacggcggCgggggccCUCCGCg -3' miRNA: 3'- -UGGUCCCcGGAGA---CGCGG----------Ga------GAGGCG- -5' |
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29099 | 3' | -64 | NC_006146.1 | + | 127130 | 0.66 | 0.583742 |
Target: 5'- gACCuGGuGGuccCCUCUGCGgcccacUCCUCUCUGUc -3' miRNA: 3'- -UGGuCC-CC---GGAGACGC------GGGAGAGGCG- -5' |
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29099 | 3' | -64 | NC_006146.1 | + | 125954 | 0.66 | 0.583742 |
Target: 5'- cCCcGGGGCCUCcccGCGCCC-CUggCCa- -3' miRNA: 3'- uGGuCCCCGGAGa--CGCGGGaGA--GGcg -5' |
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29099 | 3' | -64 | NC_006146.1 | + | 42025 | 0.66 | 0.593355 |
Target: 5'- uUCGGGcccGCCUCcGCcCCCUCUUCGUg -3' miRNA: 3'- uGGUCCc--CGGAGaCGcGGGAGAGGCG- -5' |
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29099 | 3' | -64 | NC_006146.1 | + | 64222 | 0.66 | 0.593355 |
Target: 5'- -gCAGGaGGCacaUCUGCGCCUgggCCGg -3' miRNA: 3'- ugGUCC-CCGg--AGACGCGGGagaGGCg -5' |
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29099 | 3' | -64 | NC_006146.1 | + | 10838 | 0.67 | 0.526913 |
Target: 5'- -aCAGGuGCCUgaCUGUGCCgCUCcUCUGCg -3' miRNA: 3'- ugGUCCcCGGA--GACGCGG-GAG-AGGCG- -5' |
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29099 | 3' | -64 | NC_006146.1 | + | 122041 | 0.67 | 0.508411 |
Target: 5'- cGCCuGGaGGCCgacggCUucGCGCCCgcCUCCGa -3' miRNA: 3'- -UGGuCC-CCGGa----GA--CGCGGGa-GAGGCg -5' |
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29099 | 3' | -64 | NC_006146.1 | + | 77969 | 0.68 | 0.463447 |
Target: 5'- aGCCGGuGGCCUUggaggUGCcgGUCCUCUCUGUc -3' miRNA: 3'- -UGGUCcCCGGAG-----ACG--CGGGAGAGGCG- -5' |
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29099 | 3' | -64 | NC_006146.1 | + | 81129 | 0.68 | 0.463447 |
Target: 5'- gGCCAuGGGCCcCU-CGUCCUCgauuUCCGCc -3' miRNA: 3'- -UGGUcCCCGGaGAcGCGGGAG----AGGCG- -5' |
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29099 | 3' | -64 | NC_006146.1 | + | 107788 | 0.68 | 0.472278 |
Target: 5'- cCCAGGGGCaC-CUGCGCagggUCUCCu- -3' miRNA: 3'- uGGUCCCCG-GaGACGCGgg--AGAGGcg -5' |
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29099 | 3' | -64 | NC_006146.1 | + | 44176 | 0.67 | 0.49019 |
Target: 5'- aACUGGGcGgugcccuccaGCCUCUGCGCCCUgcgaguaacgCUuuGCg -3' miRNA: 3'- -UGGUCC-C----------CGGAGACGCGGGA----------GAggCG- -5' |
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29099 | 3' | -64 | NC_006146.1 | + | 54582 | 0.67 | 0.49019 |
Target: 5'- gAUCAGGGaCCUCUGUGCCUcCUUCc- -3' miRNA: 3'- -UGGUCCCcGGAGACGCGGGaGAGGcg -5' |
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29099 | 3' | -64 | NC_006146.1 | + | 124171 | 0.67 | 0.499263 |
Target: 5'- gGCCAGcGuGGCCUCcGCcCgCCUCggagCCGCc -3' miRNA: 3'- -UGGUC-C-CCGGAGaCGcG-GGAGa---GGCG- -5' |
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29099 | 3' | -64 | NC_006146.1 | + | 93147 | 0.67 | 0.508411 |
Target: 5'- cGCUA-GGGCCUCUGCGgCaCUaUCCGg -3' miRNA: 3'- -UGGUcCCCGGAGACGCgG-GAgAGGCg -5' |
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29099 | 3' | -64 | NC_006146.1 | + | 101039 | 0.67 | 0.508411 |
Target: 5'- gACCu-GGGCCUCUaCGCCCgacCUCC-Cg -3' miRNA: 3'- -UGGucCCCGGAGAcGCGGGa--GAGGcG- -5' |
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29099 | 3' | -64 | NC_006146.1 | + | 143419 | 0.67 | 0.508411 |
Target: 5'- cGCCGGuuGGGCUguugugcCUGCGCCUUCUCa-- -3' miRNA: 3'- -UGGUC--CCCGGa------GACGCGGGAGAGgcg -5' |
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29099 | 3' | -64 | NC_006146.1 | + | 146497 | 0.67 | 0.508411 |
Target: 5'- cGCCGGuuGGGCUguugugcCUGCGCCUUCUCa-- -3' miRNA: 3'- -UGGUC--CCCGGa------GACGCGGGAGAGgcg -5' |
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29099 | 3' | -64 | NC_006146.1 | + | 149575 | 0.67 | 0.508411 |
Target: 5'- cGCCGGuuGGGCUguugugcCUGCGCCUUCUCa-- -3' miRNA: 3'- -UGGUC--CCCGGa------GACGCGGGAGAGgcg -5' |
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29099 | 3' | -64 | NC_006146.1 | + | 152653 | 0.67 | 0.508411 |
Target: 5'- cGCCGGuuGGGCUguugugcCUGCGCCUUCUCa-- -3' miRNA: 3'- -UGGUC--CCCGGa------GACGCGGGAGAGgcg -5' |
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29099 | 3' | -64 | NC_006146.1 | + | 155730 | 0.67 | 0.508411 |
Target: 5'- cGCCGGuuGGGCUguugugcCUGCGCCUUCUCa-- -3' miRNA: 3'- -UGGUC--CCCGGa------GACGCGGGAGAGgcg -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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