miRNA display CGI


Results 1 - 20 of 157 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29099 3' -64 NC_006146.1 + 519 0.7 0.342685
Target:  5'- cCCAGGGgaggcccgGCCUCcacacaCGgCCUCUCCGCg -3'
miRNA:   3'- uGGUCCC--------CGGAGac----GCgGGAGAGGCG- -5'
29099 3' -64 NC_006146.1 + 587 0.7 0.373357
Target:  5'- gGCCGGGGGCgCggcccggcgccagccCUGCcCCCUCUCCc- -3'
miRNA:   3'- -UGGUCCCCG-Ga--------------GACGcGGGAGAGGcg -5'
29099 3' -64 NC_006146.1 + 1450 0.7 0.342685
Target:  5'- cCCAGGGgaggcccgGCCUCcacacaCGgCCUCUCCGCg -3'
miRNA:   3'- uGGUCCC--------CGGAGac----GCgGGAGAGGCG- -5'
29099 3' -64 NC_006146.1 + 1518 0.7 0.373357
Target:  5'- gGCCGGGGGCgCggcccggcgccagccCUGCcCCCUCUCCc- -3'
miRNA:   3'- -UGGUCCCCG-Ga--------------GACGcGGGAGAGGcg -5'
29099 3' -64 NC_006146.1 + 2382 0.7 0.342685
Target:  5'- cCCAGGGgaggcccgGCCUCcacacaCGgCCUCUCCGCg -3'
miRNA:   3'- uGGUCCC--------CGGAGac----GCgGGAGAGGCG- -5'
29099 3' -64 NC_006146.1 + 2450 0.7 0.373357
Target:  5'- gGCCGGGGGCgCggcccggcgccagccCUGCcCCCUCUCCc- -3'
miRNA:   3'- -UGGUCCCCG-Ga--------------GACGcGGGAGAGGcg -5'
29099 3' -64 NC_006146.1 + 3314 0.7 0.342685
Target:  5'- cCCAGGGgaggcccgGCCUCcacacaCGgCCUCUCCGCg -3'
miRNA:   3'- uGGUCCC--------CGGAGac----GCgGGAGAGGCG- -5'
29099 3' -64 NC_006146.1 + 3382 0.7 0.373357
Target:  5'- gGCCGGGGGCgCggcccggcgccagccCUGCcCCCUCUCCc- -3'
miRNA:   3'- -UGGUCCCCG-Ga--------------GACGcGGGAGAGGcg -5'
29099 3' -64 NC_006146.1 + 4960 0.68 0.446049
Target:  5'- gACCAGGGGCCacgagagccUCcugGCGgCCUCacuaaCGCg -3'
miRNA:   3'- -UGGUCCCCGG---------AGa--CGCgGGAGag---GCG- -5'
29099 3' -64 NC_006146.1 + 10838 0.67 0.526913
Target:  5'- -aCAGGuGCCUgaCUGUGCCgCUCcUCUGCg -3'
miRNA:   3'- ugGUCCcCGGA--GACGCGG-GAG-AGGCG- -5'
29099 3' -64 NC_006146.1 + 11228 0.67 0.536258
Target:  5'- aACCGuGGGGCCaUCUGCGagCUUUagggucCCGCu -3'
miRNA:   3'- -UGGU-CCCCGG-AGACGCggGAGA------GGCG- -5'
29099 3' -64 NC_006146.1 + 13054 0.7 0.335484
Target:  5'- uCCAGGcGGCgCUCgGUGCCCgucccCUCCGg -3'
miRNA:   3'- uGGUCC-CCG-GAGaCGCGGGa----GAGGCg -5'
29099 3' -64 NC_006146.1 + 13266 0.7 0.342685
Target:  5'- aACCAGGGGaCCg--GCGCCCcagagccccUCgggUCCGCc -3'
miRNA:   3'- -UGGUCCCC-GGagaCGCGGG---------AG---AGGCG- -5'
29099 3' -64 NC_006146.1 + 13588 0.71 0.294621
Target:  5'- -aCAGGGGCCUCccaGgGCCCUCcagUCCa- -3'
miRNA:   3'- ugGUCCCCGGAGa--CgCGGGAG---AGGcg -5'
29099 3' -64 NC_006146.1 + 15410 0.69 0.412384
Target:  5'- cGCCAGGuGGCCUCagagggGCugGCCCgg-CUGCa -3'
miRNA:   3'- -UGGUCC-CCGGAGa-----CG--CGGGagaGGCG- -5'
29099 3' -64 NC_006146.1 + 16344 0.7 0.342685
Target:  5'- aACCAGGGGaCCg--GCGCCCcagagccccUCgggUCCGCc -3'
miRNA:   3'- -UGGUCCCC-GGagaCGCGGG---------AG---AGGCG- -5'
29099 3' -64 NC_006146.1 + 16666 0.71 0.294621
Target:  5'- -aCAGGGGCCUCccaGgGCCCUCcagUCCa- -3'
miRNA:   3'- ugGUCCCCGGAGa--CgCGGGAG---AGGcg -5'
29099 3' -64 NC_006146.1 + 18880 0.66 0.555115
Target:  5'- -gCGGGGGCCUCaGCcCCCaCUgUGCu -3'
miRNA:   3'- ugGUCCCCGGAGaCGcGGGaGAgGCG- -5'
29099 3' -64 NC_006146.1 + 19422 0.7 0.342685
Target:  5'- aACCAGGGGaCCg--GCGCCCcagagccccUCgggUCCGCc -3'
miRNA:   3'- -UGGUCCCC-GGagaCGCGGG---------AG---AGGCG- -5'
29099 3' -64 NC_006146.1 + 19744 0.71 0.294621
Target:  5'- -aCAGGGGCCUCccaGgGCCCUCcagUCCa- -3'
miRNA:   3'- ugGUCCCCGGAGa--CgCGGGAG---AGGcg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.