miRNA display CGI


Results 21 - 40 of 157 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29099 3' -64 NC_006146.1 + 19967 0.68 0.437488
Target:  5'- gGCCGGGGGCgUCUGCgaggucaggagGCCCcacgaCGCc -3'
miRNA:   3'- -UGGUCCCCGgAGACG-----------CGGGagag-GCG- -5'
29099 3' -64 NC_006146.1 + 22500 0.7 0.342685
Target:  5'- aACCAGGGGaCCg--GCGCCCcagagccccUCgggUCCGCc -3'
miRNA:   3'- -UGGUCCCC-GGagaCGCGGG---------AG---AGGCG- -5'
29099 3' -64 NC_006146.1 + 22822 0.71 0.294621
Target:  5'- -aCAGGGGCCUCccaGgGCCCUCcagUCCa- -3'
miRNA:   3'- ugGUCCCCGGAGa--CgCGGGAG---AGGcg -5'
29099 3' -64 NC_006146.1 + 23070 0.68 0.454703
Target:  5'- cGCCuucaccGGCCucaUCUGCGCCUUCUCCu- -3'
miRNA:   3'- -UGGucc---CCGG---AGACGCGGGAGAGGcg -5'
29099 3' -64 NC_006146.1 + 24292 0.67 0.526913
Target:  5'- gGCCGGGGGCUggacgCUGUuuCCC-CUCCa- -3'
miRNA:   3'- -UGGUCCCCGGa----GACGc-GGGaGAGGcg -5'
29099 3' -64 NC_006146.1 + 25578 0.7 0.342685
Target:  5'- aACCAGGGGaCCg--GCGCCCcagagccccUCgggUCCGCc -3'
miRNA:   3'- -UGGUCCCC-GGagaCGCGGG---------AG---AGGCG- -5'
29099 3' -64 NC_006146.1 + 25900 0.71 0.294621
Target:  5'- -aCAGGGGCCUCccaGgGCCCUCcagUCCa- -3'
miRNA:   3'- ugGUCCCCGGAGa--CgCGGGAG---AGGcg -5'
29099 3' -64 NC_006146.1 + 28656 0.7 0.342685
Target:  5'- aACCAGGGGaCCg--GCGCCCcagagccccUCgggUCCGCc -3'
miRNA:   3'- -UGGUCCCC-GGagaCGCGGG---------AG---AGGCG- -5'
29099 3' -64 NC_006146.1 + 28977 0.71 0.294621
Target:  5'- -aCAGGGGCCUCccaGgGCCCUCcagUCCa- -3'
miRNA:   3'- ugGUCCCCGGAGa--CgCGGGAG---AGGcg -5'
29099 3' -64 NC_006146.1 + 30205 0.77 0.117596
Target:  5'- aGCCAGaGGGCCgCUGCGCCCg--CCGg -3'
miRNA:   3'- -UGGUC-CCCGGaGACGCGGGagaGGCg -5'
29099 3' -64 NC_006146.1 + 33119 0.66 0.564617
Target:  5'- cGCCGGcggguucgccGGGCCgCUGC-CCCgCUCCGg -3'
miRNA:   3'- -UGGUC----------CCCGGaGACGcGGGaGAGGCg -5'
29099 3' -64 NC_006146.1 + 33243 0.66 0.564617
Target:  5'- cGCCGGcggguccgccGGGCCgCUGC-CCCgCUCCGg -3'
miRNA:   3'- -UGGUC----------CCCGGaGACGcGGGaGAGGCg -5'
29099 3' -64 NC_006146.1 + 33365 0.66 0.564617
Target:  5'- cGCCGGuggguccgccGGGCCgCUGC-CCCgCUCCGg -3'
miRNA:   3'- -UGGUC----------CCCGGaGACGcGGGaGAGGCg -5'
29099 3' -64 NC_006146.1 + 36711 0.66 0.593355
Target:  5'- cACCAGGGGCCUauuaCUGagacaUGCCCguggugUUCUGa -3'
miRNA:   3'- -UGGUCCCCGGA----GAC-----GCGGGa-----GAGGCg -5'
29099 3' -64 NC_006146.1 + 40537 0.68 0.437488
Target:  5'- cCCGGGGGagCUCUcaGCCC-CUCUGCa -3'
miRNA:   3'- uGGUCCCCg-GAGAcgCGGGaGAGGCG- -5'
29099 3' -64 NC_006146.1 + 41771 0.74 0.204762
Target:  5'- cGCCGGaGGCC-CUGCGCCCgggcgC-CCGCu -3'
miRNA:   3'- -UGGUCcCCGGaGACGCGGGa----GaGGCG- -5'
29099 3' -64 NC_006146.1 + 41842 0.68 0.440901
Target:  5'- -gCGGGGGCUgUCUGCGCCggcgucugggcccagCUCgggCUGCg -3'
miRNA:   3'- ugGUCCCCGG-AGACGCGG---------------GAGa--GGCG- -5'
29099 3' -64 NC_006146.1 + 42025 0.66 0.593355
Target:  5'- uUCGGGcccGCCUCcGCcCCCUCUUCGUg -3'
miRNA:   3'- uGGUCCc--CGGAGaCGcGGGAGAGGCG- -5'
29099 3' -64 NC_006146.1 + 44176 0.67 0.49019
Target:  5'- aACUGGGcGgugcccuccaGCCUCUGCGCCCUgcgaguaacgCUuuGCg -3'
miRNA:   3'- -UGGUCC-C----------CGGAGACGCGGGA----------GAggCG- -5'
29099 3' -64 NC_006146.1 + 44820 0.68 0.454703
Target:  5'- gACCucuguaGGGGGCCg--GCGCCC-CUCgUGCc -3'
miRNA:   3'- -UGG------UCCCCGGagaCGCGGGaGAG-GCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.