miRNA display CGI


Results 1 - 20 of 91 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29099 5' -57 NC_006146.1 + 84388 0.66 0.898118
Target:  5'- gGGCGGcca-UCAUGGCCUCCgguaGGCa -3'
miRNA:   3'- aCCGCUcuaaAGUGUCGGAGGg---CCGc -5'
29099 5' -57 NC_006146.1 + 70865 0.66 0.898118
Target:  5'- cGGCGcAGGUgguuugUCAgGGCUgcucCCCGGgGg -3'
miRNA:   3'- aCCGC-UCUAa-----AGUgUCGGa---GGGCCgC- -5'
29099 5' -57 NC_006146.1 + 154967 0.66 0.891612
Target:  5'- aGG-GAGAcggucagCACGGCCUcgcgcagggCCCGGCa -3'
miRNA:   3'- aCCgCUCUaaa----GUGUCGGA---------GGGCCGc -5'
29099 5' -57 NC_006146.1 + 48856 0.66 0.884884
Target:  5'- aGGCGGGcgcgaagcCGuCGGCCUCCaGGCGc -3'
miRNA:   3'- aCCGCUCuaaa----GU-GUCGGAGGgCCGC- -5'
29099 5' -57 NC_006146.1 + 122660 0.66 0.884884
Target:  5'- cGGCGGGGgcccuccgCGCGGCgCUcaCCCaGGCGc -3'
miRNA:   3'- aCCGCUCUaaa-----GUGUCG-GA--GGG-CCGC- -5'
29099 5' -57 NC_006146.1 + 114961 0.66 0.877938
Target:  5'- aUGGCGGGGggcaCGCAGCagcCCaCGGCc -3'
miRNA:   3'- -ACCGCUCUaaa-GUGUCGga-GG-GCCGc -5'
29099 5' -57 NC_006146.1 + 47567 0.66 0.877938
Target:  5'- cGGCGAGAccccUgACGGCCccgcagacgUCCCGGa- -3'
miRNA:   3'- aCCGCUCUaa--AgUGUCGG---------AGGGCCgc -5'
29099 5' -57 NC_006146.1 + 45896 0.66 0.877938
Target:  5'- gGGCauGAGAUUUU-CAGCg-CCCGGCc -3'
miRNA:   3'- aCCG--CUCUAAAGuGUCGgaGGGCCGc -5'
29099 5' -57 NC_006146.1 + 43638 0.66 0.870778
Target:  5'- cGGCGGGGcgUgGCcGCCUggggagaggggCCCGGCu -3'
miRNA:   3'- aCCGCUCUaaAgUGuCGGA-----------GGGCCGc -5'
29099 5' -57 NC_006146.1 + 67996 0.66 0.870778
Target:  5'- gGGCGcAGccacgccaCACGGCC-CCUGGCGu -3'
miRNA:   3'- aCCGC-UCuaaa----GUGUCGGaGGGCCGC- -5'
29099 5' -57 NC_006146.1 + 15142 0.66 0.870778
Target:  5'- cGGCGGGGUc-UACAG-CUCCUcgGGCGa -3'
miRNA:   3'- aCCGCUCUAaaGUGUCgGAGGG--CCGC- -5'
29099 5' -57 NC_006146.1 + 157339 0.66 0.867855
Target:  5'- cGGCcugcuugCGCAGCCcggcgCCCGGCGc -3'
miRNA:   3'- aCCGcucuaaaGUGUCGGa----GGGCCGC- -5'
29099 5' -57 NC_006146.1 + 4958 0.67 0.863409
Target:  5'- gGGaccaGGGGc--CACgagAGCCUCCUGGCGg -3'
miRNA:   3'- aCCg---CUCUaaaGUG---UCGGAGGGCCGC- -5'
29099 5' -57 NC_006146.1 + 54053 0.67 0.85889
Target:  5'- cGGCGGugg-UCAgGGCCcaccuggccgccgcgUCCCGGCa -3'
miRNA:   3'- aCCGCUcuaaAGUgUCGG---------------AGGGCCGc -5'
29099 5' -57 NC_006146.1 + 141756 0.67 0.855837
Target:  5'- aGGgGAGAggUaagGCGGCuCUCCCGGg- -3'
miRNA:   3'- aCCgCUCUaaAg--UGUCG-GAGGGCCgc -5'
29099 5' -57 NC_006146.1 + 157146 0.67 0.855837
Target:  5'- aGGgGAGAggUaagGCGGCuCUCCCGGg- -3'
miRNA:   3'- aCCgCUCUaaAg--UGUCG-GAGGGCCgc -5'
29099 5' -57 NC_006146.1 + 154068 0.67 0.855837
Target:  5'- aGGgGAGAggUaagGCGGCuCUCCCGGg- -3'
miRNA:   3'- aCCgCUCUaaAg--UGUCG-GAGGGCCgc -5'
29099 5' -57 NC_006146.1 + 150990 0.67 0.855837
Target:  5'- aGGgGAGAggUaagGCGGCuCUCCCGGg- -3'
miRNA:   3'- aCCgCUCUaaAg--UGUCG-GAGGGCCgc -5'
29099 5' -57 NC_006146.1 + 147912 0.67 0.855837
Target:  5'- aGGgGAGAggUaagGCGGCuCUCCCGGg- -3'
miRNA:   3'- aCCgCUCUaaAg--UGUCG-GAGGGCCgc -5'
29099 5' -57 NC_006146.1 + 127730 0.67 0.855837
Target:  5'- aGGCcAGGUagcuccCugAGCCUCCCGGa- -3'
miRNA:   3'- aCCGcUCUAaa----GugUCGGAGGGCCgc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.