miRNA display CGI


Results 1 - 20 of 24 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
2910 3' -58.8 NC_001493.1 + 90198 0.66 0.789478
Target:  5'- cAGGUUcAUGGACUGcaccgcgucucucacGAGGGGGUucgCGGGu -3'
miRNA:   3'- -UCCAAcUGCCUGGC---------------CUCUCCCA---GCCC- -5'
2910 3' -58.8 NC_001493.1 + 115700 0.67 0.739807
Target:  5'- gGGGgcGugGGGgUGGcGAGGGU-GGGu -3'
miRNA:   3'- -UCCaaCugCCUgGCCuCUCCCAgCCC- -5'
2910 3' -58.8 NC_001493.1 + 107573 0.68 0.671759
Target:  5'- uGGGcUUGAUGGACCGGucguGucGGuGUCGGu -3'
miRNA:   3'- -UCC-AACUGCCUGGCCu---Cu-CC-CAGCCc -5'
2910 3' -58.8 NC_001493.1 + 45422 0.68 0.671759
Target:  5'- cGGGUUGucCGGACCGGGcuugaacauGAGGGacuUUGGu -3'
miRNA:   3'- -UCCAACu-GCCUGGCCU---------CUCCC---AGCCc -5'
2910 3' -58.8 NC_001493.1 + 132082 0.69 0.641972
Target:  5'- cGGUgagaGGACCGGuGAGGGUgccccaGGGc -3'
miRNA:   3'- uCCAacugCCUGGCCuCUCCCAg-----CCC- -5'
2910 3' -58.8 NC_001493.1 + 16528 0.69 0.641972
Target:  5'- cGGUgagaGGACCGGuGAGGGUgccccaGGGc -3'
miRNA:   3'- uCCAacugCCUGGCCuCUCCCAg-----CCC- -5'
2910 3' -58.8 NC_001493.1 + 51525 0.69 0.632018
Target:  5'- gAGGggGACcuGGACCgccacgGGAGGGGGUCa-- -3'
miRNA:   3'- -UCCaaCUG--CCUGG------CCUCUCCCAGccc -5'
2910 3' -58.8 NC_001493.1 + 91413 0.69 0.622065
Target:  5'- ----aGACGGcGCCGucguGAGAGGGUgGGGa -3'
miRNA:   3'- uccaaCUGCC-UGGC----CUCUCCCAgCCC- -5'
2910 3' -58.8 NC_001493.1 + 124810 0.69 0.612118
Target:  5'- cGG--GACaGGACCGGGGAGGcGggcgUGGGg -3'
miRNA:   3'- uCCaaCUG-CCUGGCCUCUCC-Ca---GCCC- -5'
2910 3' -58.8 NC_001493.1 + 69135 0.69 0.612118
Target:  5'- cGGUguGC-GACUGGGuuGGGGGUCGGGa -3'
miRNA:   3'- uCCAacUGcCUGGCCU--CUCCCAGCCC- -5'
2910 3' -58.8 NC_001493.1 + 9256 0.69 0.612118
Target:  5'- cGG--GACaGGACCGGGGAGGcGggcgUGGGg -3'
miRNA:   3'- uCCaaCUG-CCUGGCCUCUCC-Ca---GCCC- -5'
2910 3' -58.8 NC_001493.1 + 8334 0.7 0.582391
Target:  5'- cGGUU--CGGGCCGG--GGGGUCGGa -3'
miRNA:   3'- uCCAAcuGCCUGGCCucUCCCAGCCc -5'
2910 3' -58.8 NC_001493.1 + 123888 0.7 0.582391
Target:  5'- cGGUU--CGGGCCGG--GGGGUCGGa -3'
miRNA:   3'- uCCAAcuGCCUGGCCucUCCCAGCCc -5'
2910 3' -58.8 NC_001493.1 + 30824 0.7 0.572542
Target:  5'- ----cGACGGGCCGGu---GGUCGGGg -3'
miRNA:   3'- uccaaCUGCCUGGCCucucCCAGCCC- -5'
2910 3' -58.8 NC_001493.1 + 87279 0.7 0.552968
Target:  5'- cGGUUG-CGGACCuGAGAGGcG-CGGa -3'
miRNA:   3'- uCCAACuGCCUGGcCUCUCC-CaGCCc -5'
2910 3' -58.8 NC_001493.1 + 79097 0.71 0.543255
Target:  5'- gAGGUU-AUGGACCGG-GAGcacGUCGGGc -3'
miRNA:   3'- -UCCAAcUGCCUGGCCuCUCc--CAGCCC- -5'
2910 3' -58.8 NC_001493.1 + 102476 0.71 0.533599
Target:  5'- uGGUggaagGugGGGCCucGGcGGGUCGGGg -3'
miRNA:   3'- uCCAa----CugCCUGGccUCuCCCAGCCC- -5'
2910 3' -58.8 NC_001493.1 + 112163 0.71 0.524004
Target:  5'- -cGUUuGCGGGCCGGAuGGGGagCGGGa -3'
miRNA:   3'- ucCAAcUGCCUGGCCUcUCCCa-GCCC- -5'
2910 3' -58.8 NC_001493.1 + 92204 0.72 0.486338
Target:  5'- ----cGACGGAucCCGGGGAGGGgauaGGGu -3'
miRNA:   3'- uccaaCUGCCU--GGCCUCUCCCag--CCC- -5'
2910 3' -58.8 NC_001493.1 + 107600 0.72 0.455362
Target:  5'- aAGGUUGGCGGcguugacACCGGucccgGGGGGGUggccggaauccacaCGGGg -3'
miRNA:   3'- -UCCAACUGCC-------UGGCC-----UCUCCCA--------------GCCC- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.