miRNA display CGI


Results 21 - 40 of 174 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
2910 5' -52.7 NC_001493.1 + 34368 0.66 0.978091
Target:  5'- aCCGCGGCCCuCCAucACCauCGUGUGUCg -3'
miRNA:   3'- gGGUGUUGGG-GGUu-UGG--GUAUGCAGg -5'
2910 5' -52.7 NC_001493.1 + 80315 0.66 0.978091
Target:  5'- -aCACAGCCCCUuggcgagcggggGGAUCC---CGUCCa -3'
miRNA:   3'- ggGUGUUGGGGG------------UUUGGGuauGCAGG- -5'
2910 5' -52.7 NC_001493.1 + 111672 0.66 0.978091
Target:  5'- aCCCGCGAgCaCCAGcCCCGguCGUCUg -3'
miRNA:   3'- -GGGUGUUgGgGGUUuGGGUauGCAGG- -5'
2910 5' -52.7 NC_001493.1 + 50543 0.66 0.97563
Target:  5'- aCCCACGGCCgC--GACUCGUACcacaUCCa -3'
miRNA:   3'- -GGGUGUUGGgGguUUGGGUAUGc---AGG- -5'
2910 5' -52.7 NC_001493.1 + 11275 0.66 0.97563
Target:  5'- -gCGCGACCgCCGGACCgCGUACacauguauauguGUCUg -3'
miRNA:   3'- ggGUGUUGGgGGUUUGG-GUAUG------------CAGG- -5'
2910 5' -52.7 NC_001493.1 + 102063 0.66 0.97563
Target:  5'- -gCACccUCUCCGAGCCCAUAUGUa- -3'
miRNA:   3'- ggGUGuuGGGGGUUUGGGUAUGCAgg -5'
2910 5' -52.7 NC_001493.1 + 126829 0.66 0.97563
Target:  5'- -gCGCGACCgCCGGACCgCGUACacauguauauguGUCUg -3'
miRNA:   3'- ggGUGUUGGgGGUUUGG-GUAUG------------CAGG- -5'
2910 5' -52.7 NC_001493.1 + 56284 0.66 0.97563
Target:  5'- aUCACuuCCCCgAGgcGCUCGUugGUCg -3'
miRNA:   3'- gGGUGuuGGGGgUU--UGGGUAugCAGg -5'
2910 5' -52.7 NC_001493.1 + 50419 0.66 0.97563
Target:  5'- gCCCAaucCCCCCAGagauGCCC--ACGaCCg -3'
miRNA:   3'- -GGGUguuGGGGGUU----UGGGuaUGCaGG- -5'
2910 5' -52.7 NC_001493.1 + 76043 0.66 0.97563
Target:  5'- cCCCAUguAAUCCCCGAcaCgGUugGUCUu -3'
miRNA:   3'- -GGGUG--UUGGGGGUUugGgUAugCAGG- -5'
2910 5' -52.7 NC_001493.1 + 31503 0.66 0.97563
Target:  5'- gCCCGCGcccACCUCUcgGCCCAg--GUUCg -3'
miRNA:   3'- -GGGUGU---UGGGGGuuUGGGUaugCAGG- -5'
2910 5' -52.7 NC_001493.1 + 32115 0.66 0.97563
Target:  5'- aCCCAUGGaCCCC---CCCAUGcCGUCUc -3'
miRNA:   3'- -GGGUGUUgGGGGuuuGGGUAU-GCAGG- -5'
2910 5' -52.7 NC_001493.1 + 28121 0.66 0.97563
Target:  5'- gCCgCGCGugCCCCGAucgaucACCacgAUAUGUUCg -3'
miRNA:   3'- -GG-GUGUugGGGGUU------UGGg--UAUGCAGG- -5'
2910 5' -52.7 NC_001493.1 + 30933 0.66 0.972973
Target:  5'- cCCgGCAACgCCCCucGugCCGUACa-CCg -3'
miRNA:   3'- -GGgUGUUG-GGGGu-UugGGUAUGcaGG- -5'
2910 5' -52.7 NC_001493.1 + 81422 0.66 0.972973
Target:  5'- cCCCgagGCGGCCCUguuacacgagCAGACCCAcgACcUCCu -3'
miRNA:   3'- -GGG---UGUUGGGG----------GUUUGGGUa-UGcAGG- -5'
2910 5' -52.7 NC_001493.1 + 123025 0.66 0.972973
Target:  5'- -aCACGAgCCCCAucACCCGUucgGUUCg -3'
miRNA:   3'- ggGUGUUgGGGGUu-UGGGUAug-CAGG- -5'
2910 5' -52.7 NC_001493.1 + 27877 0.66 0.972973
Target:  5'- gCUCACGACCaCCGgcguacGAUCCGUGguaGUCCg -3'
miRNA:   3'- -GGGUGUUGGgGGU------UUGGGUAUg--CAGG- -5'
2910 5' -52.7 NC_001493.1 + 7471 0.66 0.972973
Target:  5'- -aCACGAgCCCCAucACCCGUucgGUUCg -3'
miRNA:   3'- ggGUGUUgGGGGUu-UGGGUAug-CAGG- -5'
2910 5' -52.7 NC_001493.1 + 42729 0.66 0.972973
Target:  5'- cCUCACAACCggcaccaacaCCCGAGCCCGc-CGUgaagCCa -3'
miRNA:   3'- -GGGUGUUGG----------GGGUUUGGGUauGCA----GG- -5'
2910 5' -52.7 NC_001493.1 + 68673 0.66 0.972973
Target:  5'- aCCCGuCGAgCCCCGGAUCUAccgGgGUCUu -3'
miRNA:   3'- -GGGU-GUUgGGGGUUUGGGUa--UgCAGG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.