miRNA display CGI


Results 1 - 11 of 11 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29100 3' -51.2 NC_006146.1 + 62567 0.66 0.994697
Target:  5'- uCUGGugcuuuguCUUUGCCAAC-CUGcUCUCGCUg -3'
miRNA:   3'- -GACUu-------GAAGUGGUUGaGGC-AGAGCGA- -5'
29100 3' -51.2 NC_006146.1 + 67416 0.66 0.994697
Target:  5'- uCUGGACgcgCACguGCUCggacagguaaGUCUCGCg -3'
miRNA:   3'- -GACUUGaa-GUGguUGAGg---------CAGAGCGa -5'
29100 3' -51.2 NC_006146.1 + 116207 0.66 0.992908
Target:  5'- -----aUUCACCAggacagucuGCUCCGUC-CGCUu -3'
miRNA:   3'- gacuugAAGUGGU---------UGAGGCAGaGCGA- -5'
29100 3' -51.2 NC_006146.1 + 48674 0.66 0.992286
Target:  5'- cCUGGcccauGCUUCGCCgGccucccucgcccgccGCUCCGUC-CGCUc -3'
miRNA:   3'- -GACU-----UGAAGUGG-U---------------UGAGGCAGaGCGA- -5'
29100 3' -51.2 NC_006146.1 + 58858 0.66 0.990667
Target:  5'- gCUGAGCUgccCACCccaccugacggaAACagCCGUCuUCGCUg -3'
miRNA:   3'- -GACUUGAa--GUGG------------UUGa-GGCAG-AGCGA- -5'
29100 3' -51.2 NC_006146.1 + 39721 0.67 0.987903
Target:  5'- -aGGcCUgCACCAGCUUCuUCUCGCg -3'
miRNA:   3'- gaCUuGAaGUGGUUGAGGcAGAGCGa -5'
29100 3' -51.2 NC_006146.1 + 165747 0.67 0.982621
Target:  5'- -gGAACUUCAgCAGgg-CGUCUCGCa -3'
miRNA:   3'- gaCUUGAAGUgGUUgagGCAGAGCGa -5'
29100 3' -51.2 NC_006146.1 + 22696 0.69 0.952459
Target:  5'- cCUGAugUUCcuggGCCugauguGCUCCGUCUggaCGCa -3'
miRNA:   3'- -GACUugAAG----UGGu-----UGAGGCAGA---GCGa -5'
29100 3' -51.2 NC_006146.1 + 128470 0.7 0.938957
Target:  5'- gCUGGcgGCgcgCAcCCAGCUgCGUCUCGCc -3'
miRNA:   3'- -GACU--UGaa-GU-GGUUGAgGCAGAGCGa -5'
29100 3' -51.2 NC_006146.1 + 67296 0.71 0.911457
Target:  5'- -cGAGCUcCGCCAGCUCCcgggccacGUCcgCGCUg -3'
miRNA:   3'- gaCUUGAaGUGGUUGAGG--------CAGa-GCGA- -5'
29100 3' -51.2 NC_006146.1 + 127532 1.09 0.00923
Target:  5'- cCUGAACUUCACCAACUCCGUCUCGCUa -3'
miRNA:   3'- -GACUUGAAGUGGUUGAGGCAGAGCGA- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.