miRNA display CGI


Results 1 - 16 of 16 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29100 5' -57.4 NC_006146.1 + 18862 0.66 0.874803
Target:  5'- -uGCCGGGGUGGUGgacGUGCggGGGc -3'
miRNA:   3'- acUGGCUCCACCACagcCACGagCUC- -5'
29100 5' -57.4 NC_006146.1 + 552 0.66 0.866898
Target:  5'- uUGGCUcGGG-GGUGUUuacugaguaacagGGUGCUCGAc -3'
miRNA:   3'- -ACUGGcUCCaCCACAG-------------CCACGAGCUc -5'
29100 5' -57.4 NC_006146.1 + 50293 0.67 0.860249
Target:  5'- cGACCGAGG-GGaaGUUGGUGgUCcAGa -3'
miRNA:   3'- aCUGGCUCCaCCa-CAGCCACgAGcUC- -5'
29100 5' -57.4 NC_006146.1 + 60426 0.67 0.860249
Target:  5'- cUGGCCGGGGUGGaaUGUCaGaccaugGC-CGAGu -3'
miRNA:   3'- -ACUGGCUCCACC--ACAGcCa-----CGaGCUC- -5'
29100 5' -57.4 NC_006146.1 + 91107 0.67 0.860249
Target:  5'- gUGGCagcgGAGGgaGGUGagGGUGC-CGAGg -3'
miRNA:   3'- -ACUGg---CUCCa-CCACagCCACGaGCUC- -5'
29100 5' -57.4 NC_006146.1 + 57341 0.67 0.860249
Target:  5'- gGGgCGGGGccccgGGUGUCGGUGaggGAGg -3'
miRNA:   3'- aCUgGCUCCa----CCACAGCCACgagCUC- -5'
29100 5' -57.4 NC_006146.1 + 167763 0.67 0.836958
Target:  5'- gGGCCG-GGUGGgcgCGcaugGCUCGAGa -3'
miRNA:   3'- aCUGGCuCCACCacaGCca--CGAGCUC- -5'
29100 5' -57.4 NC_006146.1 + 59710 0.67 0.82883
Target:  5'- aGGCgGAGGUGuUGUUGGUGUaggcCGGGu -3'
miRNA:   3'- aCUGgCUCCACcACAGCCACGa---GCUC- -5'
29100 5' -57.4 NC_006146.1 + 44085 0.67 0.82883
Target:  5'- gGACUGGGGUGGUuccaccUCGGgccgcgcGCUCGGc -3'
miRNA:   3'- aCUGGCUCCACCAc-----AGCCa------CGAGCUc -5'
29100 5' -57.4 NC_006146.1 + 75246 0.68 0.794684
Target:  5'- cUGACCGAGGcggGcGUGg-GGUGCaCGGGg -3'
miRNA:   3'- -ACUGGCUCCa--C-CACagCCACGaGCUC- -5'
29100 5' -57.4 NC_006146.1 + 78046 0.68 0.776738
Target:  5'- gUGGCCGAgaaaaggauggGGUGGuUGUa-GUGCUCGAa -3'
miRNA:   3'- -ACUGGCU-----------CCACC-ACAgcCACGAGCUc -5'
29100 5' -57.4 NC_006146.1 + 89738 0.68 0.776738
Target:  5'- aGACC-AGGUGGUGcaUCGG-GCUCcGGc -3'
miRNA:   3'- aCUGGcUCCACCAC--AGCCaCGAGcUC- -5'
29100 5' -57.4 NC_006146.1 + 156916 0.68 0.776738
Target:  5'- cGGCCGAGGccugGGUGgCGGcGCUgaCGGGc -3'
miRNA:   3'- aCUGGCUCCa---CCACaGCCaCGA--GCUC- -5'
29100 5' -57.4 NC_006146.1 + 105197 0.7 0.680966
Target:  5'- gGGCCGGGGagccgggGGUGccCGGUGCcUGAGa -3'
miRNA:   3'- aCUGGCUCCa------CCACa-GCCACGaGCUC- -5'
29100 5' -57.4 NC_006146.1 + 140132 0.72 0.571359
Target:  5'- gUGGCgGAGGUGGUGgcgggGGUGCccCGGGu -3'
miRNA:   3'- -ACUGgCUCCACCACag---CCACGa-GCUC- -5'
29100 5' -57.4 NC_006146.1 + 127566 1.09 0.002447
Target:  5'- aUGACCGAGGUGGUGUCGGUGCUCGAGg -3'
miRNA:   3'- -ACUGGCUCCACCACAGCCACGAGCUC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.