miRNA display CGI


Results 1 - 20 of 81 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29101 3' -46.4 NC_006146.1 + 39208 0.66 0.999983
Target:  5'- -gGCGGAGGACGAcGAUgaACAauACCa- -3'
miRNA:   3'- agCGCCUUUUGUU-CUAgaUGU--UGGac -5'
29101 3' -46.4 NC_006146.1 + 82513 0.66 0.999983
Target:  5'- cCGUGGu---CAGGGcCUGCAcGCCUGg -3'
miRNA:   3'- aGCGCCuuuuGUUCUaGAUGU-UGGAC- -5'
29101 3' -46.4 NC_006146.1 + 123409 0.66 0.999976
Target:  5'- cCGCGGcggccgAAGACcAGAUCgGCGAgCUGa -3'
miRNA:   3'- aGCGCC------UUUUGuUCUAGaUGUUgGAC- -5'
29101 3' -46.4 NC_006146.1 + 61446 0.66 0.999976
Target:  5'- cUCGUGGggGAgCuccAGcUCUACuACCUGu -3'
miRNA:   3'- -AGCGCCuuUU-Gu--UCuAGAUGuUGGAC- -5'
29101 3' -46.4 NC_006146.1 + 98486 0.66 0.999967
Target:  5'- cCGCGGAc--CAAGGUCaGCAGagacuCCUGu -3'
miRNA:   3'- aGCGCCUuuuGUUCUAGaUGUU-----GGAC- -5'
29101 3' -46.4 NC_006146.1 + 129931 0.66 0.999967
Target:  5'- gCGCGGcaccACGGcGGUCUACGgcacggACCUGg -3'
miRNA:   3'- aGCGCCuuu-UGUU-CUAGAUGU------UGGAC- -5'
29101 3' -46.4 NC_006146.1 + 124497 0.66 0.999967
Target:  5'- aCGCGGGAcucGGCcuGGUCU-CGGcCCUGg -3'
miRNA:   3'- aGCGCCUU---UUGuuCUAGAuGUU-GGAC- -5'
29101 3' -46.4 NC_006146.1 + 104272 0.66 0.999967
Target:  5'- aUCGUGGGAAcgagcgcuguGCAGGGguucgUCUGCGugCUu -3'
miRNA:   3'- -AGCGCCUUU----------UGUUCU-----AGAUGUugGAc -5'
29101 3' -46.4 NC_006146.1 + 91964 0.66 0.999956
Target:  5'- cCaCGGAGGACAAGcaa-ACGGCCUGg -3'
miRNA:   3'- aGcGCCUUUUGUUCuagaUGUUGGAC- -5'
29101 3' -46.4 NC_006146.1 + 75016 0.66 0.999956
Target:  5'- cCGgGGccaguACAGGAUCUGgAACCg- -3'
miRNA:   3'- aGCgCCuuu--UGUUCUAGAUgUUGGac -5'
29101 3' -46.4 NC_006146.1 + 75064 0.66 0.999956
Target:  5'- cCGgGGccaguACAGGAUCUGgAGCCg- -3'
miRNA:   3'- aGCgCCuuu--UGUUCUAGAUgUUGGac -5'
29101 3' -46.4 NC_006146.1 + 34798 0.66 0.999956
Target:  5'- -aGUGGAgGAAUAGGGUaCUACAGCUg- -3'
miRNA:   3'- agCGCCU-UUUGUUCUA-GAUGUUGGac -5'
29101 3' -46.4 NC_006146.1 + 138628 0.66 0.999956
Target:  5'- -aGUGGAgGAAUAGGGUaCUACAGCUg- -3'
miRNA:   3'- agCGCCU-UUUGUUCUA-GAUGUUGGac -5'
29101 3' -46.4 NC_006146.1 + 54266 0.66 0.999956
Target:  5'- -gGCGGGAAACGuccuccgagaGGGUCUc--GCCUGa -3'
miRNA:   3'- agCGCCUUUUGU----------UCUAGAuguUGGAC- -5'
29101 3' -46.4 NC_006146.1 + 75112 0.66 0.999956
Target:  5'- cCGgGGccaguACAGGAUCUGgAGCCg- -3'
miRNA:   3'- aGCgCCuuu--UGUUCUAGAUgUUGGac -5'
29101 3' -46.4 NC_006146.1 + 4312 0.67 0.999941
Target:  5'- aCGCGGGGAugGCAAGAUCcAgGGCg-- -3'
miRNA:   3'- aGCGCCUUU--UGUUCUAGaUgUUGgac -5'
29101 3' -46.4 NC_006146.1 + 59823 0.67 0.999938
Target:  5'- gUCGCGGGAccgGGCAcccuuuguGGAUCagagucaaucccACAGCCUGu -3'
miRNA:   3'- -AGCGCCUU---UUGU--------UCUAGa-----------UGUUGGAC- -5'
29101 3' -46.4 NC_006146.1 + 58111 0.67 0.999936
Target:  5'- gCGCaacGGGAGGCAGGAgagcgugccucauuUUUACAugcGCCUGg -3'
miRNA:   3'- aGCG---CCUUUUGUUCU--------------AGAUGU---UGGAC- -5'
29101 3' -46.4 NC_006146.1 + 142208 0.67 0.999922
Target:  5'- -aGCGGAGAcCAGGAgg-AC-GCCUGg -3'
miRNA:   3'- agCGCCUUUuGUUCUagaUGuUGGAC- -5'
29101 3' -46.4 NC_006146.1 + 145286 0.67 0.999922
Target:  5'- -aGCGGAGAcCAGGAgg-AC-GCCUGg -3'
miRNA:   3'- agCGCCUUUuGUUCUagaUGuUGGAC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.