miRNA display CGI


Results 1 - 20 of 81 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29101 3' -46.4 NC_006146.1 + 127886 1.1 0.024416
Target:  5'- uUCGCGGAAAACAAGAUCUACAACCUGu -3'
miRNA:   3'- -AGCGCCUUUUGUUCUAGAUGUUGGAC- -5'
29101 3' -46.4 NC_006146.1 + 64208 0.78 0.883968
Target:  5'- gUCGCGGAGcuccGGCAGGAggcacaUCUGC-GCCUGg -3'
miRNA:   3'- -AGCGCCUU----UUGUUCU------AGAUGuUGGAC- -5'
29101 3' -46.4 NC_006146.1 + 99707 0.75 0.957751
Target:  5'- -gGCGGGAGugAGGAUCUuCAGgCUGa -3'
miRNA:   3'- agCGCCUUUugUUCUAGAuGUUgGAC- -5'
29101 3' -46.4 NC_006146.1 + 83855 0.74 0.971609
Target:  5'- cUCGUGGAGGA-AGGAUUUuaACGGCCUGa -3'
miRNA:   3'- -AGCGCCUUUUgUUCUAGA--UGUUGGAC- -5'
29101 3' -46.4 NC_006146.1 + 158782 0.73 0.985786
Target:  5'- -gGCGGGAAGC--GGUCccGCAGCCUGa -3'
miRNA:   3'- agCGCCUUUUGuuCUAGa-UGUUGGAC- -5'
29101 3' -46.4 NC_006146.1 + 156531 0.72 0.98749
Target:  5'- -aGCGGGAGGCGAGAUCccGgGACCc- -3'
miRNA:   3'- agCGCCUUUUGUUCUAGa-UgUUGGac -5'
29101 3' -46.4 NC_006146.1 + 14853 0.71 0.992785
Target:  5'- cCGCGGGAGGcCGAGGgg-GCAGCCa- -3'
miRNA:   3'- aGCGCCUUUU-GUUCUagaUGUUGGac -5'
29101 3' -46.4 NC_006146.1 + 66263 0.71 0.992786
Target:  5'- -gGUGGggGGCAGGGUCUcGCGGguccuCCUGa -3'
miRNA:   3'- agCGCCuuUUGUUCUAGA-UGUU-----GGAC- -5'
29101 3' -46.4 NC_006146.1 + 162546 0.71 0.993395
Target:  5'- aCGCGGAAGACGGGGgggacggugguccCUAuCAGCCUc -3'
miRNA:   3'- aGCGCCUUUUGUUCUa------------GAU-GUUGGAc -5'
29101 3' -46.4 NC_006146.1 + 61609 0.71 0.994659
Target:  5'- cCGCGGccGGGGcCGAGAUCccucccagcUACGACCUGa -3'
miRNA:   3'- aGCGCC--UUUU-GUUCUAG---------AUGUUGGAC- -5'
29101 3' -46.4 NC_006146.1 + 35906 0.71 0.994981
Target:  5'- aUGCGGGacagucacguucaugGAACgAGGGUCUGCAuCCUGu -3'
miRNA:   3'- aGCGCCU---------------UUUG-UUCUAGAUGUuGGAC- -5'
29101 3' -46.4 NC_006146.1 + 25004 0.7 0.997232
Target:  5'- -gGCGGAGGACAacgAGGUCUu---CCUGa -3'
miRNA:   3'- agCGCCUUUUGU---UCUAGAuguuGGAC- -5'
29101 3' -46.4 NC_006146.1 + 11913 0.7 0.997232
Target:  5'- aCGCGGuGGAGCAccuGGUCUuuGCGGCCUc -3'
miRNA:   3'- aGCGCC-UUUUGUu--CUAGA--UGUUGGAc -5'
29101 3' -46.4 NC_006146.1 + 150560 0.7 0.997681
Target:  5'- -gGCaGGAGAACAcgcGGAUCUGCuGGCCa- -3'
miRNA:   3'- agCG-CCUUUUGU---UCUAGAUG-UUGGac -5'
29101 3' -46.4 NC_006146.1 + 151218 0.7 0.997681
Target:  5'- aCGCaGGAGAuuuGCAGGAUCagguCAGCCUc -3'
miRNA:   3'- aGCG-CCUUU---UGUUCUAGau--GUUGGAc -5'
29101 3' -46.4 NC_006146.1 + 94954 0.7 0.997681
Target:  5'- cUGCGGuAGAGgGGGGUgUGCAGCCa- -3'
miRNA:   3'- aGCGCC-UUUUgUUCUAgAUGUUGGac -5'
29101 3' -46.4 NC_006146.1 + 51179 0.7 0.998067
Target:  5'- gUGUGGAAG--GGGGUCUGCGGgCUGg -3'
miRNA:   3'- aGCGCCUUUugUUCUAGAUGUUgGAC- -5'
29101 3' -46.4 NC_006146.1 + 52000 0.7 0.998067
Target:  5'- gCGCGuuucggacgagaGAGAGCGAGAgggCaGCGGCCUGa -3'
miRNA:   3'- aGCGC------------CUUUUGUUCUa--GaUGUUGGAC- -5'
29101 3' -46.4 NC_006146.1 + 58971 0.7 0.998067
Target:  5'- cUCGaGGGAGACGGuGGccacCUGCAACCUGg -3'
miRNA:   3'- -AGCgCCUUUUGUU-CUa---GAUGUUGGAC- -5'
29101 3' -46.4 NC_006146.1 + 38806 0.69 0.998679
Target:  5'- cUGCGGGGuGCAc-AUCUGCAGCCa- -3'
miRNA:   3'- aGCGCCUUuUGUucUAGAUGUUGGac -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.