miRNA display CGI


Results 21 - 40 of 81 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29101 3' -46.4 NC_006146.1 + 145426 0.69 0.998918
Target:  5'- -gGcCGGGcAGGCcGGGUCUugGGCCUGg -3'
miRNA:   3'- agC-GCCU-UUUGuUCUAGAugUUGGAC- -5'
29101 3' -46.4 NC_006146.1 + 148504 0.69 0.998918
Target:  5'- -gGcCGGGcAGGCcGGGUCUugGGCCUGg -3'
miRNA:   3'- agC-GCCU-UUUGuUCUAGAugUUGGAC- -5'
29101 3' -46.4 NC_006146.1 + 154660 0.69 0.998918
Target:  5'- -gGcCGGGcAGGCcGGGUCUugGGCCUGg -3'
miRNA:   3'- agC-GCCU-UUUGuUCUAGAugUUGGAC- -5'
29101 3' -46.4 NC_006146.1 + 157737 0.69 0.998918
Target:  5'- -gGcCGGGcAGGCcGGGUCUugGGCCUGg -3'
miRNA:   3'- agC-GCCU-UUUGuUCUAGAugUUGGAC- -5'
29101 3' -46.4 NC_006146.1 + 142348 0.69 0.998918
Target:  5'- -gGcCGGGcAGGCcGGGUCUugGGCCUGg -3'
miRNA:   3'- agC-GCCU-UUUGuUCUAGAugUUGGAC- -5'
29101 3' -46.4 NC_006146.1 + 151582 0.69 0.998918
Target:  5'- -gGcCGGGcAGGCcGGGUCUugGGCCUGg -3'
miRNA:   3'- agC-GCCU-UUUGuUCUAGAugUUGGAC- -5'
29101 3' -46.4 NC_006146.1 + 70748 0.69 0.9991
Target:  5'- cUCGCGGAcgccgccGAGaAGGAUCUuuuUGACCUGa -3'
miRNA:   3'- -AGCGCCU-------UUUgUUCUAGAu--GUUGGAC- -5'
29101 3' -46.4 NC_006146.1 + 23366 0.69 0.999118
Target:  5'- gCGCGuGGAAAUAGGGUCUAgGGgaCUGg -3'
miRNA:   3'- aGCGC-CUUUUGUUCUAGAUgUUg-GAC- -5'
29101 3' -46.4 NC_006146.1 + 2429 0.69 0.999118
Target:  5'- cCGUGGAcgugAGGCcGGAUCUGCGcACCg- -3'
miRNA:   3'- aGCGCCU----UUUGuUCUAGAUGU-UGGac -5'
29101 3' -46.4 NC_006146.1 + 76903 0.69 0.999118
Target:  5'- aCGUGGGAGccagaggugaccGCGGGG-CUGCAGCCg- -3'
miRNA:   3'- aGCGCCUUU------------UGUUCUaGAUGUUGGac -5'
29101 3' -46.4 NC_006146.1 + 74925 0.69 0.999118
Target:  5'- -gGCaGu--ACAGGAUCUGgAACCUGg -3'
miRNA:   3'- agCGcCuuuUGUUCUAGAUgUUGGAC- -5'
29101 3' -46.4 NC_006146.1 + 104053 0.69 0.999118
Target:  5'- aCGCuGGAG---GAGAUCUAUGACCUc -3'
miRNA:   3'- aGCG-CCUUuugUUCUAGAUGUUGGAc -5'
29101 3' -46.4 NC_006146.1 + 114586 0.69 0.999286
Target:  5'- cUCGCGGc--GCAg---CUACGGCCUGg -3'
miRNA:   3'- -AGCGCCuuuUGUucuaGAUGUUGGAC- -5'
29101 3' -46.4 NC_006146.1 + 65081 0.69 0.999286
Target:  5'- gCGCGGG--GCAGGAggggcccuauUCUGCuGCCUa -3'
miRNA:   3'- aGCGCCUuuUGUUCU----------AGAUGuUGGAc -5'
29101 3' -46.4 NC_006146.1 + 24811 0.69 0.999286
Target:  5'- gUGUGGAAAuACGAGAUCUuu-GCCUc -3'
miRNA:   3'- aGCGCCUUU-UGUUCUAGAuguUGGAc -5'
29101 3' -46.4 NC_006146.1 + 143201 0.69 0.999286
Target:  5'- aCGCGGGAGuACGuggaaauGAUCUugAACCc- -3'
miRNA:   3'- aGCGCCUUU-UGUu------CUAGAugUUGGac -5'
29101 3' -46.4 NC_006146.1 + 115698 0.68 0.999387
Target:  5'- -gGCGGccGACAGGAgacgCUcgcccgccgcggccGCAGCCUGg -3'
miRNA:   3'- agCGCCuuUUGUUCUa---GA--------------UGUUGGAC- -5'
29101 3' -46.4 NC_006146.1 + 127963 0.68 0.999713
Target:  5'- -gGCGGAGGGCAGGGaCcGgGACCUa -3'
miRNA:   3'- agCGCCUUUUGUUCUaGaUgUUGGAc -5'
29101 3' -46.4 NC_006146.1 + 155467 0.68 0.999713
Target:  5'- cUGCGccAGGCAGGA-CUGCAGCCg- -3'
miRNA:   3'- aGCGCcuUUUGUUCUaGAUGUUGGac -5'
29101 3' -46.4 NC_006146.1 + 90151 0.68 0.999713
Target:  5'- -aGCGGA--GCAGGAg--GCAGCCg- -3'
miRNA:   3'- agCGCCUuuUGUUCUagaUGUUGGac -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.