miRNA display CGI


Results 41 - 60 of 81 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29101 3' -46.4 NC_006146.1 + 11514 0.68 0.999775
Target:  5'- aUCGUGGAcAGCGcGGcCUGCGAgCUGg -3'
miRNA:   3'- -AGCGCCUuUUGUuCUaGAUGUUgGAC- -5'
29101 3' -46.4 NC_006146.1 + 120577 0.68 0.999775
Target:  5'- cCGCGGAugGCAAG-UUU--GACCUGg -3'
miRNA:   3'- aGCGCCUuuUGUUCuAGAugUUGGAC- -5'
29101 3' -46.4 NC_006146.1 + 85576 0.67 0.999825
Target:  5'- aCGUGGGGuGGCAGGAg--GCAGCCg- -3'
miRNA:   3'- aGCGCCUU-UUGUUCUagaUGUUGGac -5'
29101 3' -46.4 NC_006146.1 + 156871 0.67 0.999825
Target:  5'- cUGCGGggGACAGGGUggACgGGgCUGg -3'
miRNA:   3'- aGCGCCuuUUGUUCUAgaUG-UUgGAC- -5'
29101 3' -46.4 NC_006146.1 + 153793 0.67 0.999825
Target:  5'- cUGCGGggGACAGGGUggACgGGgCUGg -3'
miRNA:   3'- aGCGCCuuUUGUUCUAgaUG-UUgGAC- -5'
29101 3' -46.4 NC_006146.1 + 150715 0.67 0.999825
Target:  5'- cUGCGGggGACAGGGUggACgGGgCUGg -3'
miRNA:   3'- aGCGCCuuUUGUUCUAgaUG-UUgGAC- -5'
29101 3' -46.4 NC_006146.1 + 147638 0.67 0.999825
Target:  5'- cUGCGGggGACAGGGUggACgGGgCUGg -3'
miRNA:   3'- aGCGCCuuUUGUUCUAgaUG-UUgGAC- -5'
29101 3' -46.4 NC_006146.1 + 144560 0.67 0.999825
Target:  5'- cUGCGGggGACAGGGUggACgGGgCUGg -3'
miRNA:   3'- aGCGCCuuUUGUUCUAgaUG-UUgGAC- -5'
29101 3' -46.4 NC_006146.1 + 141482 0.67 0.999825
Target:  5'- cUGCGGggGACAGGGUggACgGGgCUGg -3'
miRNA:   3'- aGCGCCuuUUGUUCUAgaUG-UUgGAC- -5'
29101 3' -46.4 NC_006146.1 + 132341 0.67 0.999869
Target:  5'- cUCGUGGAugucacuaaggaacuGGACGGGGUcCUGCGucuccacggccuaaACCUGg -3'
miRNA:   3'- -AGCGCCU---------------UUUGUUCUA-GAUGU--------------UGGAC- -5'
29101 3' -46.4 NC_006146.1 + 112389 0.67 0.999897
Target:  5'- gUUGUGGAcgccGCAGGggCUGCcguGCCUGu -3'
miRNA:   3'- -AGCGCCUuu--UGUUCuaGAUGu--UGGAC- -5'
29101 3' -46.4 NC_006146.1 + 126421 0.67 0.999897
Target:  5'- cCGCGaacGAGAugGCGAGAUUUcACAGCCUc -3'
miRNA:   3'- aGCGC---CUUU--UGUUCUAGA-UGUUGGAc -5'
29101 3' -46.4 NC_006146.1 + 43200 0.67 0.999897
Target:  5'- cUCGCGGGAGGCGGGGa-UGgGGCgCUGc -3'
miRNA:   3'- -AGCGCCUUUUGUUCUagAUgUUG-GAC- -5'
29101 3' -46.4 NC_006146.1 + 21041 0.67 0.999897
Target:  5'- uUCuCGGAGGGCGAGAcgCUGCGcuucGCCg- -3'
miRNA:   3'- -AGcGCCUUUUGUUCUa-GAUGU----UGGac -5'
29101 3' -46.4 NC_006146.1 + 151442 0.67 0.999922
Target:  5'- -aGCGGAGAcCAGGAgg-AC-GCCUGg -3'
miRNA:   3'- agCGCCUUUuGUUCUagaUGuUGGAC- -5'
29101 3' -46.4 NC_006146.1 + 15129 0.67 0.999922
Target:  5'- -aGCGGcucuucugcGGCGGGGUCUACAGCUc- -3'
miRNA:   3'- agCGCCuu-------UUGUUCUAGAUGUUGGac -5'
29101 3' -46.4 NC_006146.1 + 148364 0.67 0.999922
Target:  5'- -aGCGGAGAcCAGGAgg-AC-GCCUGg -3'
miRNA:   3'- agCGCCUUUuGUUCUagaUGuUGGAC- -5'
29101 3' -46.4 NC_006146.1 + 145286 0.67 0.999922
Target:  5'- -aGCGGAGAcCAGGAgg-AC-GCCUGg -3'
miRNA:   3'- agCGCCUUUuGUUCUagaUGuUGGAC- -5'
29101 3' -46.4 NC_006146.1 + 142208 0.67 0.999922
Target:  5'- -aGCGGAGAcCAGGAgg-AC-GCCUGg -3'
miRNA:   3'- agCGCCUUUuGUUCUagaUGuUGGAC- -5'
29101 3' -46.4 NC_006146.1 + 105873 0.67 0.999922
Target:  5'- cCG-GGGAGGCAAGAUa-GCGGCCa- -3'
miRNA:   3'- aGCgCCUUUUGUUCUAgaUGUUGGac -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.