miRNA display CGI


Results 21 - 40 of 81 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29101 3' -46.4 NC_006146.1 + 59823 0.67 0.999938
Target:  5'- gUCGCGGGAccgGGCAcccuuuguGGAUCagagucaaucccACAGCCUGu -3'
miRNA:   3'- -AGCGCCUU---UUGU--------UCUAGa-----------UGUUGGAC- -5'
29101 3' -46.4 NC_006146.1 + 61446 0.66 0.999976
Target:  5'- cUCGUGGggGAgCuccAGcUCUACuACCUGu -3'
miRNA:   3'- -AGCGCCuuUU-Gu--UCuAGAUGuUGGAC- -5'
29101 3' -46.4 NC_006146.1 + 61609 0.71 0.994659
Target:  5'- cCGCGGccGGGGcCGAGAUCccucccagcUACGACCUGa -3'
miRNA:   3'- aGCGCC--UUUU-GUUCUAG---------AUGUUGGAC- -5'
29101 3' -46.4 NC_006146.1 + 64208 0.78 0.883968
Target:  5'- gUCGCGGAGcuccGGCAGGAggcacaUCUGC-GCCUGg -3'
miRNA:   3'- -AGCGCCUU----UUGUUCU------AGAUGuUGGAC- -5'
29101 3' -46.4 NC_006146.1 + 65081 0.69 0.999286
Target:  5'- gCGCGGG--GCAGGAggggcccuauUCUGCuGCCUa -3'
miRNA:   3'- aGCGCCUuuUGUUCU----------AGAUGuUGGAc -5'
29101 3' -46.4 NC_006146.1 + 66263 0.71 0.992786
Target:  5'- -gGUGGggGGCAGGGUCUcGCGGguccuCCUGa -3'
miRNA:   3'- agCGCCuuUUGUUCUAGA-UGUU-----GGAC- -5'
29101 3' -46.4 NC_006146.1 + 70748 0.69 0.9991
Target:  5'- cUCGCGGAcgccgccGAGaAGGAUCUuuuUGACCUGa -3'
miRNA:   3'- -AGCGCCU-------UUUgUUCUAGAu--GUUGGAC- -5'
29101 3' -46.4 NC_006146.1 + 74925 0.69 0.999118
Target:  5'- -gGCaGu--ACAGGAUCUGgAACCUGg -3'
miRNA:   3'- agCGcCuuuUGUUCUAGAUgUUGGAC- -5'
29101 3' -46.4 NC_006146.1 + 75016 0.66 0.999956
Target:  5'- cCGgGGccaguACAGGAUCUGgAACCg- -3'
miRNA:   3'- aGCgCCuuu--UGUUCUAGAUgUUGGac -5'
29101 3' -46.4 NC_006146.1 + 75064 0.66 0.999956
Target:  5'- cCGgGGccaguACAGGAUCUGgAGCCg- -3'
miRNA:   3'- aGCgCCuuu--UGUUCUAGAUgUUGGac -5'
29101 3' -46.4 NC_006146.1 + 75112 0.66 0.999956
Target:  5'- cCGgGGccaguACAGGAUCUGgAGCCg- -3'
miRNA:   3'- aGCgCCuuu--UGUUCUAGAUgUUGGac -5'
29101 3' -46.4 NC_006146.1 + 76903 0.69 0.999118
Target:  5'- aCGUGGGAGccagaggugaccGCGGGG-CUGCAGCCg- -3'
miRNA:   3'- aGCGCCUUU------------UGUUCUaGAUGUUGGac -5'
29101 3' -46.4 NC_006146.1 + 82513 0.66 0.999983
Target:  5'- cCGUGGu---CAGGGcCUGCAcGCCUGg -3'
miRNA:   3'- aGCGCCuuuuGUUCUaGAUGU-UGGAC- -5'
29101 3' -46.4 NC_006146.1 + 83855 0.74 0.971609
Target:  5'- cUCGUGGAGGA-AGGAUUUuaACGGCCUGa -3'
miRNA:   3'- -AGCGCCUUUUgUUCUAGA--UGUUGGAC- -5'
29101 3' -46.4 NC_006146.1 + 85576 0.67 0.999825
Target:  5'- aCGUGGGGuGGCAGGAg--GCAGCCg- -3'
miRNA:   3'- aGCGCCUU-UUGUUCUagaUGUUGGac -5'
29101 3' -46.4 NC_006146.1 + 90151 0.68 0.999713
Target:  5'- -aGCGGA--GCAGGAg--GCAGCCg- -3'
miRNA:   3'- agCGCCUuuUGUUCUagaUGUUGGac -5'
29101 3' -46.4 NC_006146.1 + 91964 0.66 0.999956
Target:  5'- cCaCGGAGGACAAGcaa-ACGGCCUGg -3'
miRNA:   3'- aGcGCCUUUUGUUCuagaUGUUGGAC- -5'
29101 3' -46.4 NC_006146.1 + 94954 0.7 0.997681
Target:  5'- cUGCGGuAGAGgGGGGUgUGCAGCCa- -3'
miRNA:   3'- aGCGCC-UUUUgUUCUAgAUGUUGGac -5'
29101 3' -46.4 NC_006146.1 + 98486 0.66 0.999967
Target:  5'- cCGCGGAc--CAAGGUCaGCAGagacuCCUGu -3'
miRNA:   3'- aGCGCCUuuuGUUCUAGaUGUU-----GGAC- -5'
29101 3' -46.4 NC_006146.1 + 99707 0.75 0.957751
Target:  5'- -gGCGGGAGugAGGAUCUuCAGgCUGa -3'
miRNA:   3'- agCGCCUUUugUUCUAGAuGUUgGAC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.