miRNA display CGI


Results 41 - 60 of 81 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29101 3' -46.4 NC_006146.1 + 104053 0.69 0.999118
Target:  5'- aCGCuGGAG---GAGAUCUAUGACCUc -3'
miRNA:   3'- aGCG-CCUUuugUUCUAGAUGUUGGAc -5'
29101 3' -46.4 NC_006146.1 + 104272 0.66 0.999967
Target:  5'- aUCGUGGGAAcgagcgcuguGCAGGGguucgUCUGCGugCUu -3'
miRNA:   3'- -AGCGCCUUU----------UGUUCU-----AGAUGUugGAc -5'
29101 3' -46.4 NC_006146.1 + 105873 0.67 0.999922
Target:  5'- cCG-GGGAGGCAAGAUa-GCGGCCa- -3'
miRNA:   3'- aGCgCCUUUUGUUCUAgaUGUUGGac -5'
29101 3' -46.4 NC_006146.1 + 106824 0.67 0.999922
Target:  5'- uUUGUGGAGAugAGGGagUUUGucacCAGCCUGg -3'
miRNA:   3'- -AGCGCCUUUugUUCU--AGAU----GUUGGAC- -5'
29101 3' -46.4 NC_006146.1 + 112389 0.67 0.999897
Target:  5'- gUUGUGGAcgccGCAGGggCUGCcguGCCUGu -3'
miRNA:   3'- -AGCGCCUuu--UGUUCuaGAUGu--UGGAC- -5'
29101 3' -46.4 NC_006146.1 + 114586 0.69 0.999286
Target:  5'- cUCGCGGc--GCAg---CUACGGCCUGg -3'
miRNA:   3'- -AGCGCCuuuUGUucuaGAUGUUGGAC- -5'
29101 3' -46.4 NC_006146.1 + 115698 0.68 0.999387
Target:  5'- -gGCGGccGACAGGAgacgCUcgcccgccgcggccGCAGCCUGg -3'
miRNA:   3'- agCGCCuuUUGUUCUa---GA--------------UGUUGGAC- -5'
29101 3' -46.4 NC_006146.1 + 120577 0.68 0.999775
Target:  5'- cCGCGGAugGCAAG-UUU--GACCUGg -3'
miRNA:   3'- aGCGCCUuuUGUUCuAGAugUUGGAC- -5'
29101 3' -46.4 NC_006146.1 + 123409 0.66 0.999976
Target:  5'- cCGCGGcggccgAAGACcAGAUCgGCGAgCUGa -3'
miRNA:   3'- aGCGCC------UUUUGuUCUAGaUGUUgGAC- -5'
29101 3' -46.4 NC_006146.1 + 124497 0.66 0.999967
Target:  5'- aCGCGGGAcucGGCcuGGUCU-CGGcCCUGg -3'
miRNA:   3'- aGCGCCUU---UUGuuCUAGAuGUU-GGAC- -5'
29101 3' -46.4 NC_006146.1 + 126421 0.67 0.999897
Target:  5'- cCGCGaacGAGAugGCGAGAUUUcACAGCCUc -3'
miRNA:   3'- aGCGC---CUUU--UGUUCUAGA-UGUUGGAc -5'
29101 3' -46.4 NC_006146.1 + 127886 1.1 0.024416
Target:  5'- uUCGCGGAAAACAAGAUCUACAACCUGu -3'
miRNA:   3'- -AGCGCCUUUUGUUCUAGAUGUUGGAC- -5'
29101 3' -46.4 NC_006146.1 + 127963 0.68 0.999713
Target:  5'- -gGCGGAGGGCAGGGaCcGgGACCUa -3'
miRNA:   3'- agCGCCUUUUGUUCUaGaUgUUGGAc -5'
29101 3' -46.4 NC_006146.1 + 129931 0.66 0.999967
Target:  5'- gCGCGGcaccACGGcGGUCUACGgcacggACCUGg -3'
miRNA:   3'- aGCGCCuuu-UGUU-CUAGAUGU------UGGAC- -5'
29101 3' -46.4 NC_006146.1 + 132341 0.67 0.999869
Target:  5'- cUCGUGGAugucacuaaggaacuGGACGGGGUcCUGCGucuccacggccuaaACCUGg -3'
miRNA:   3'- -AGCGCCU---------------UUUGUUCUA-GAUGU--------------UGGAC- -5'
29101 3' -46.4 NC_006146.1 + 138628 0.66 0.999956
Target:  5'- -aGUGGAgGAAUAGGGUaCUACAGCUg- -3'
miRNA:   3'- agCGCCU-UUUGUUCUA-GAUGUUGGac -5'
29101 3' -46.4 NC_006146.1 + 141482 0.67 0.999825
Target:  5'- cUGCGGggGACAGGGUggACgGGgCUGg -3'
miRNA:   3'- aGCGCCuuUUGUUCUAgaUG-UUgGAC- -5'
29101 3' -46.4 NC_006146.1 + 142208 0.67 0.999922
Target:  5'- -aGCGGAGAcCAGGAgg-AC-GCCUGg -3'
miRNA:   3'- agCGCCUUUuGUUCUagaUGuUGGAC- -5'
29101 3' -46.4 NC_006146.1 + 142348 0.69 0.998918
Target:  5'- -gGcCGGGcAGGCcGGGUCUugGGCCUGg -3'
miRNA:   3'- agC-GCCU-UUUGuUCUAGAugUUGGAC- -5'
29101 3' -46.4 NC_006146.1 + 143201 0.69 0.999286
Target:  5'- aCGCGGGAGuACGuggaaauGAUCUugAACCc- -3'
miRNA:   3'- aGCGCCUUU-UGUu------CUAGAugUUGGac -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.