miRNA display CGI


Results 1 - 20 of 81 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29101 3' -46.4 NC_006146.1 + 162546 0.71 0.993395
Target:  5'- aCGCGGAAGACGGGGgggacggugguccCUAuCAGCCUc -3'
miRNA:   3'- aGCGCCUUUUGUUCUa------------GAU-GUUGGAc -5'
29101 3' -46.4 NC_006146.1 + 158782 0.73 0.985786
Target:  5'- -gGCGGGAAGC--GGUCccGCAGCCUGa -3'
miRNA:   3'- agCGCCUUUUGuuCUAGa-UGUUGGAC- -5'
29101 3' -46.4 NC_006146.1 + 157737 0.69 0.998918
Target:  5'- -gGcCGGGcAGGCcGGGUCUugGGCCUGg -3'
miRNA:   3'- agC-GCCU-UUUGuUCUAGAugUUGGAC- -5'
29101 3' -46.4 NC_006146.1 + 157598 0.67 0.999922
Target:  5'- -aGCGGAGAcCAGGAgg-AC-GCCUGg -3'
miRNA:   3'- agCGCCUUUuGUUCUagaUGuUGGAC- -5'
29101 3' -46.4 NC_006146.1 + 156871 0.67 0.999825
Target:  5'- cUGCGGggGACAGGGUggACgGGgCUGg -3'
miRNA:   3'- aGCGCCuuUUGUUCUAgaUG-UUgGAC- -5'
29101 3' -46.4 NC_006146.1 + 156531 0.72 0.98749
Target:  5'- -aGCGGGAGGCGAGAUCccGgGACCc- -3'
miRNA:   3'- agCGCCUUUUGUUCUAGa-UgUUGGac -5'
29101 3' -46.4 NC_006146.1 + 155467 0.68 0.999713
Target:  5'- cUGCGccAGGCAGGA-CUGCAGCCg- -3'
miRNA:   3'- aGCGCcuUUUGUUCUaGAUGUUGGac -5'
29101 3' -46.4 NC_006146.1 + 154660 0.69 0.998918
Target:  5'- -gGcCGGGcAGGCcGGGUCUugGGCCUGg -3'
miRNA:   3'- agC-GCCU-UUUGuUCUAGAugUUGGAC- -5'
29101 3' -46.4 NC_006146.1 + 154520 0.67 0.999922
Target:  5'- -aGCGGAGAcCAGGAgg-AC-GCCUGg -3'
miRNA:   3'- agCGCCUUUuGUUCUagaUGuUGGAC- -5'
29101 3' -46.4 NC_006146.1 + 153793 0.67 0.999825
Target:  5'- cUGCGGggGACAGGGUggACgGGgCUGg -3'
miRNA:   3'- aGCGCCuuUUGUUCUAgaUG-UUgGAC- -5'
29101 3' -46.4 NC_006146.1 + 151582 0.69 0.998918
Target:  5'- -gGcCGGGcAGGCcGGGUCUugGGCCUGg -3'
miRNA:   3'- agC-GCCU-UUUGuUCUAGAugUUGGAC- -5'
29101 3' -46.4 NC_006146.1 + 151442 0.67 0.999922
Target:  5'- -aGCGGAGAcCAGGAgg-AC-GCCUGg -3'
miRNA:   3'- agCGCCUUUuGUUCUagaUGuUGGAC- -5'
29101 3' -46.4 NC_006146.1 + 151218 0.7 0.997681
Target:  5'- aCGCaGGAGAuuuGCAGGAUCagguCAGCCUc -3'
miRNA:   3'- aGCG-CCUUU---UGUUCUAGau--GUUGGAc -5'
29101 3' -46.4 NC_006146.1 + 150715 0.67 0.999825
Target:  5'- cUGCGGggGACAGGGUggACgGGgCUGg -3'
miRNA:   3'- aGCGCCuuUUGUUCUAgaUG-UUgGAC- -5'
29101 3' -46.4 NC_006146.1 + 150560 0.7 0.997681
Target:  5'- -gGCaGGAGAACAcgcGGAUCUGCuGGCCa- -3'
miRNA:   3'- agCG-CCUUUUGU---UCUAGAUG-UUGGac -5'
29101 3' -46.4 NC_006146.1 + 148504 0.69 0.998918
Target:  5'- -gGcCGGGcAGGCcGGGUCUugGGCCUGg -3'
miRNA:   3'- agC-GCCU-UUUGuUCUAGAugUUGGAC- -5'
29101 3' -46.4 NC_006146.1 + 148364 0.67 0.999922
Target:  5'- -aGCGGAGAcCAGGAgg-AC-GCCUGg -3'
miRNA:   3'- agCGCCUUUuGUUCUagaUGuUGGAC- -5'
29101 3' -46.4 NC_006146.1 + 147638 0.67 0.999825
Target:  5'- cUGCGGggGACAGGGUggACgGGgCUGg -3'
miRNA:   3'- aGCGCCuuUUGUUCUAgaUG-UUgGAC- -5'
29101 3' -46.4 NC_006146.1 + 145426 0.69 0.998918
Target:  5'- -gGcCGGGcAGGCcGGGUCUugGGCCUGg -3'
miRNA:   3'- agC-GCCU-UUUGuUCUAGAugUUGGAC- -5'
29101 3' -46.4 NC_006146.1 + 145286 0.67 0.999922
Target:  5'- -aGCGGAGAcCAGGAgg-AC-GCCUGg -3'
miRNA:   3'- agCGCCUUUuGUUCUagaUGuUGGAC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.